Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0249300-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:8082926:8084825:-1 gene:Os11g0249300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os11t0249300-01)
Sequence

ATGGCGATTTTTTTTTTGGTCCTGCAGGCGCGAGGATGGAGCTCGCACCCGTTCTCGTTC
CCTTCCCAGCCGCCGGATATCAAGAACTGGTTCTCGAGCTATGAGTACGAGTCGCCGGAG
GTGCCGGAGCTGGTTGGTGGCAATGGCGGCAATAGCGGCAGCGAGACCCAAGACCCGCTG
GAGAATATCCAGGTCGGGGTGCCTGTGGATTCGTTGTTGGAACCGACCACCCATGATGGT
GATGGTGATGGTGATGGTGATTCTGCTTTGAGGGGAAACCAATGTGGACAGCAACACGAG
CATGAGGTTTCTGCTATTAGAGAGTTCATTCCCATTAGTAAGAGCAAAGTGGAGCGTGGC
ACGAAGAGGAAGCAAAGCTTGCGGAGCTTGTTCGGAGATGGCTTTCTTGACAACATCGGT
GAGACTTCTGAAACTGAAACTCAGGCGGTGTTGTCTGTTCAGAGAAATGAAGCCGAGCCT
CTGCCAGATCGCAATGCCATGGGCTTGCCTGATGATGATGATACTCAAGGAGGTCAGGAA
GGCGCGATCGAATGCAGTGAGCTGCCGGTGGATTGTAATGGCATCGATGTAGGTGATACT
CAAGAAGGTTCCCAGGTTGATCAGGAGAAAGAGCAGAGCAAACTGCTAATTGGTGATGGT
ATGAGTTCATGTCATGCTGACAAAATCACCCCGAAAGATGGTAATGAGCAGAGCAAACTG
TCAGTTGATTGTACTAGAACATGCAAGGATCGCACCAAAAGGCGGTTTGACGGAAATGGC
ATTAAGAGCAGCCTACCATCCATCGGTTGTAATGATATCATCATACCTAACACTGAAGAA
AATTCTCCAGGAGAAGAAACTTGCCATGGCAACCCTGCAATGGATGACAAAGAGCAGGAA
GAAACAGTTGCAGCTGATGGTTTTGTTGCCATCAAGAGAAAGGAGAAACTAGAACAAACA
TTCAACACAAACAAAATTCCTAAGCCCCCAACGAGAAGAGCGAAGTCCACGACGTTGCAA
GAGAACCGTGACATTGTGGAACAGAAAGTCGTAGTCCAAGAACGCACTAGCAGAAGCCCC
TTAGCAGACATGACTAATGTTTCAGAAGTAGCAGCTGCTCCAACAACGACAGAGATCCGC
GGTAAATGGAAGTGCCCTCGCAAAGGGAAGCACTATGTTGGTCCTCCGTTGAAACAGCTG
CGTTTGGGGCAATGGTTGCGCCGACTGGATTGA

Peptide Sequence

PEP ID

Os11t0249300-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:8082926:8084825:-1 gene:Os11g0249300 transcript:Os11t0249300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os11t0249300-01)
Sequence

MAIFFLVLQARGWSSHPFSFPSQPPDIKNWFSSYEYESPEVPELVGGNGGNSGSETQDPL
ENIQVGVPVDSLLEPTTHDGDGDGDGDSALRGNQCGQQHEHEVSAIREFIPISKSKVERG
TKRKQSLRSLFGDGFLDNIGETSETETQAVLSVQRNEAEPLPDRNAMGLPDDDDTQGGQE
GAIECSELPVDCNGIDVGDTQEGSQVDQEKEQSKLLIGDGMSSCHADKITPKDGNEQSKL
SVDCTRTCKDRTKRRFDGNGIKSSLPSIGCNDIIIPNTEENSPGEETCHGNPAMDDKEQE
ETVAADGFVAIKRKEKLEQTFNTNKIPKPPTRRAKSTTLQENRDIVEQKVVVQERTSRSP
LADMTNVSEVAAAPTTTEIRGKWKCPRKGKHYVGPPLKQLRLGQWLRRLD

Transcript Sequence

Transcript ID

Os11t0249300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:8082926:8084825:-1 gene:Os11g0249300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os11t0249300-01)
Sequence

GAAATTTCAGAGCCCCAGACGCGGCACCGCGGCAGAGCGGCATCTTCTTCTTCCTCCTCG
CGACTCCCACCCTCCGGCCTCGGTCGCCGCCATGGCCGAGACCCCCGACGAATCCGCGGC
CGCAATCGAGGTACGCCGCCTCAAGGCATTCCCCTTCGATCTCCTCCTATCCTCCCAATC
CTTGCTTCTTCAATGCTATCCCGTCGACCGCCGCTCGCCGGCTCAACCGATTGGCCTTTC
GGGATGCTCTTACCCTCACGATGGCGATTTTTTTTTTGGTCCTGCAGGCGCGAGGATGGA
GCTCGCACCCGTTCTCGTTCCCTTCCCAGCCGCCGGATATCAAGAACTGGTTCTCGAGCT
ATGAGTACGAGTCGCCGGAGGTGCCGGAGCTGGTTGGTGGCAATGGCGGCAATAGCGGCA
GCGAGACCCAAGACCCGCTGGAGAATATCCAGGTCGGGGTGCCTGTGGATTCGTTGTTGG
AACCGACCACCCATGATGGTGATGGTGATGGTGATGGTGATTCTGCTTTGAGGGGAAACC
AATGTGGACAGCAACACGAGCATGAGGTTTCTGCTATTAGAGAGTTCATTCCCATTAGTA
AGAGCAAAGTGGAGCGTGGCACGAAGAGGAAGCAAAGCTTGCGGAGCTTGTTCGGAGATG
GCTTTCTTGACAACATCGGTGAGACTTCTGAAACTGAAACTCAGGCGGTGTTGTCTGTTC
AGAGAAATGAAGCCGAGCCTCTGCCAGATCGCAATGCCATGGGCTTGCCTGATGATGATG
ATACTCAAGGAGGTCAGGAAGGCGCGATCGAATGCAGTGAGCTGCCGGTGGATTGTAATG
GCATCGATGTAGGTGATACTCAAGAAGGTTCCCAGGTTGATCAGGAGAAAGAGCAGAGCA
AACTGCTAATTGGTGATGGTATGAGTTCATGTCATGCTGACAAAATCACCCCGAAAGATG
GTAATGAGCAGAGCAAACTGTCAGTTGATTGTACTAGAACATGCAAGGATCGCACCAAAA
GGCGGTTTGACGGAAATGGCATTAAGAGCAGCCTACCATCCATCGGTTGTAATGATATCA
TCATACCTAACACTGAAGAAAATTCTCCAGGAGAAGAAACTTGCCATGGCAACCCTGCAA
TGGATGACAAAGAGCAGGAAGAAACAGTTGCAGCTGATGGTTTTGTTGCCATCAAGAGAA
AGGAGAAACTAGAACAAACATTCAACACAAACAAAATTCCTAAGCCCCCAACGAGAAGAG
CGAAGTCCACGACGTTGCAAGAGAACCGTGACATTGTGGAACAGAAAGTCGTAGTCCAAG
AACGCACTAGCAGAAGCCCCTTAGCAGACATGACTAATGTTTCAGAAGTAGCAGCTGCTC
CAACAACGACAGAGATCCGCGGTAAATGGAAGTGCCCTCGCAAAGGGAAGCACTATGTTG
GTCCTCCGTTGAAACAGCTGCGTTTGGGGCAATGGTTGCGCCGACTGGATTGAAGCATAT
GCATTGTTCAGGTTGAAGCAATTTTTCCTTTTGTATTGGCAACTGGTGATTTGGTGCCAT
GTTTTCAGGTTTGGTGTTTTTACCCAGCCTGTTGTACGAGTGCATGCCACTATATATGTC
AGGCAGAAAACACTATATGCCTGCTTCTATGGTC