Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0247400-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:7964623:7969046:-1 gene:Os11g0247400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Haemolysin A domain containing protein. (Os11t0247400-01)
Sequence

ATGATGATGGTGGCTTCCAGGCTCCGATTCCACCAGCTTAGGCTGATTGGGGTCAGGCCG
ACCTGCTGCTCTCCGTCCCGGGATTTCGCGGCGGTGAGAACCCAAAAGCTTCAGCTCGCC
AAGAAGAAAAGACGATTGGATGAAGTGTGCCTTGAGAGATTTCAACAGTATAGCAGGACG
TACATCCAATCATGGATTCTTCAGGGTAAGGTCCTTGTGGATGGAAGGGTTGTGAATAAA
GCTGGAACACAAGTATCTGACAAGTCGATCATAGAAATCAAGGCTGAAATTCCAAAATAT
GTATGTAGAGCTGGTCATAAGCTTGAGGCGGCTATCAAAGAATTTGGTATTGACTGTGAT
GAAAAGGTAGCCCTTGATTCAGGGTTATCCACTGGCGGTTTTACTGACTGTTTACTCCAA
CATGGGGCATCACATGTATATGGTGTTGATGTTGGCTATGGACAGGTGGCTGAAAAAATT
CGAGTGCATGAACGTGTTTCAGTAATTGAACGTACAAATTTAAGATATCTTACTGAACTG
CCACAGCTGGTTGACTTGGTGACCCTGGATCTGTCATTCATCTCAATTCTCTTGGTTATG
CCTGCTGTAGTCAAAGTAATGAAGACAGACTCGACATTGATTACACTTATCAAACCTCAA
TTTGAAGCTCGTCGATCTCAGGTAGGAGGTGGTGGGATTGTTCGGGACCCTCTGGTTCAT
AAAGAGGTGCTAGATAGGATAATTTCAGGCGTAGAGCAGTTTGGATTCTGCAACAAGGGC
TGGATTGAATCTCCGATAAAGGGCGCGGAAGGGAACAAAGAGTTTCTTGCTTGCTTCCAT
AGGATCCCAGTGCAAGAATTGCAGCCGGAGGAAGCAAAGTCAACATGA

Peptide Sequence

PEP ID

Os11t0247400-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:7964623:7969046:-1 gene:Os11g0247400 transcript:Os11t0247400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Haemolysin A domain containing protein. (Os11t0247400-01)
Sequence

MMMVASRLRFHQLRLIGVRPTCCSPSRDFAAVRTQKLQLAKKKRRLDEVCLERFQQYSRT
YIQSWILQGKVLVDGRVVNKAGTQVSDKSIIEIKAEIPKYVCRAGHKLEAAIKEFGIDCD
EKVALDSGLSTGGFTDCLLQHGASHVYGVDVGYGQVAEKIRVHERVSVIERTNLRYLTEL
PQLVDLVTLDLSFISILLVMPAVVKVMKTDSTLITLIKPQFEARRSQVGGGGIVRDPLVH
KEVLDRIISGVEQFGFCNKGWIESPIKGAEGNKEFLACFHRIPVQELQPEEAKST

Transcript Sequence

Transcript ID

Os11t0247400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:7964623:7969046:-1 gene:Os11g0247400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Haemolysin A domain containing protein. (Os11t0247400-01)
Sequence

GGACCGAGCGAGAGGAGAGAAGGGGCGCCGCCGCCGCCGCCGCCGCCCGCCATCCGCGCC
GCTTCTCCTTCTCCTACAGCATATATATATCTCGTCGGCGAACTGAGATAGGGTAACTGA
GATTAGGGTTTTGGCTCGGAGGGGGAGTGGAGCGGGAGGAGGAGGAGGAGGCGAGGCGAT
GATGATGGTGGCTTCCAGGCTCCGATTCCACCAGCTTAGGCTGATTGGGGTCAGGCCGAC
CTGCTGCTCTCCGTCCCGGGATTTCGCGGCGGTGAGAACCCAAAAGCTTCAGCTCGCCAA
GAAGAAAAGACGATTGGATGAAGTGTGCCTTGAGAGATTTCAACAGTATAGCAGGACGTA
CATCCAATCATGGATTCTTCAGGGTAAGGTCCTTGTGGATGGAAGGGTTGTGAATAAAGC
TGGAACACAAGTATCTGACAAGTCGATCATAGAAATCAAGGCTGAAATTCCAAAATATGT
ATGTAGAGCTGGTCATAAGCTTGAGGCGGCTATCAAAGAATTTGGTATTGACTGTGATGA
AAAGGTAGCCCTTGATTCAGGGTTATCCACTGGCGGTTTTACTGACTGTTTACTCCAACA
TGGGGCATCACATGTATATGGTGTTGATGTTGGCTATGGACAGGTGGCTGAAAAAATTCG
AGTGCATGAACGTGTTTCAGTAATTGAACGTACAAATTTAAGATATCTTACTGAACTGCC
ACAGCTGGTTGACTTGGTGACCCTGGATCTGTCATTCATCTCAATTCTCTTGGTTATGCC
TGCTGTAGTCAAAGTAATGAAGACAGACTCGACATTGATTACACTTATCAAACCTCAATT
TGAAGCTCGTCGATCTCAGGTAGGAGGTGGTGGGATTGTTCGGGACCCTCTGGTTCATAA
AGAGGTGCTAGATAGGATAATTTCAGGCGTAGAGCAGTTTGGATTCTGCAACAAGGGCTG
GATTGAATCTCCGATAAAGGGCGCGGAAGGGAACAAAGAGTTTCTTGCTTGCTTCCATAG
GATCCCAGTGCAAGAATTGCAGCCGGAGGAAGCAAAGTCAACATGATTATTTGTACCTAA
TGCCATATCTAGTTCACATAGAATAGCTGGAGAATACTTTCTGATCTTTTTACCAAGGAT
GTTACTTCAAATTGGCATAATGTGATGTGAGAATCCCTTTTGC