Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0245500-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:7817994:7824068:-1 gene:Os11g0245500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Lipid-binding START domain containing protein. (Os11t0245500-01)
Sequence

ATGAGCAGTGGTGGTGGCTCCTCTCCAACATCATCCCCTTCTGTCTGCTCCAGATCATGG
TCTATAAGTGAGGATTCGTTGAAGAGGTACGTGAGCTACGCGAGCGAGAGCTGCATCCAG
GAGCTCCTCGCCGCGTCGGACTCCGGCGGCGGCGGCGGCGGCGGCGACGATGGGTGGAAG
GTGCTCGCGTACTGCAACGGCGTGGAGATATCGAAGCGGCGGGCCGGGGCGGCGCACGTC
TTCCGGAGCCGGTGGCTGCTGCACGCCGTCTCGCCGGGGAAGTTCATGGCCGTCGCCAAC
GCCGTCGACGCCGCCAAGCAGTGGGAGTCGGACCTGGTGGACGCCCGGTACATCAGGGAG
CTGGGCGACGACCTGAGCATCGTCCACCTCAAGCTCGGCGCCGACGCCTCCAAGCGCACC
GCCGGCCTCTTCCGCCGCCGCGACGTCGTCGTCTACGAGCGCCGCCAGACCATGGACGAC
GGCACGCTGGTGGTCGCCGTGGCGTCGCTGCCCAAGGAGATCGCCGCGGGCCTCCTGCCC
CCCGGCTCCTCCTCCGGCGCCCGCGGCGCCGGCCTGCTGCTCCAGTCCGGCTGGGTCGTC
GAGAAGCTCGACGCCGGCGACGGCGGCGACGGCCCGCCCTGCTGCGTCGTCACCTACGTC
GTGCAGCTCGACCCCGCCGCCGGGTGGCTGCCCCGGTGCTTCGTCAGCCGGCTCAACAGC
AAGCTCGTCATCATGATCGTCGCCAAGCTCAAGAAGATGGCCCTCGCCACCATGCACTCC
GCCGCCGCCGACGACGGCGAGGTGATGCCATGA

Peptide Sequence

PEP ID

Os11t0245500-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:7817994:7824068:-1 gene:Os11g0245500 transcript:Os11t0245500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Lipid-binding START domain containing protein. (Os11t0245500-01)
Sequence

MSSGGGSSPTSSPSVCSRSWSISEDSLKRYVSYASESCIQELLAASDSGGGGGGGDDGWK
VLAYCNGVEISKRRAGAAHVFRSRWLLHAVSPGKFMAVANAVDAAKQWESDLVDARYIRE
LGDDLSIVHLKLGADASKRTAGLFRRRDVVVYERRQTMDDGTLVVAVASLPKEIAAGLLP
PGSSSGARGAGLLLQSGWVVEKLDAGDGGDGPPCCVVTYVVQLDPAAGWLPRCFVSRLNS
KLVIMIVAKLKKMALATMHSAAADDGEVMP

Transcript Sequence

Transcript ID

Os11t0245500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:7817994:7824068:-1 gene:Os11g0245500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Lipid-binding START domain containing protein. (Os11t0245500-01)
Sequence

ATCTCCATTTCCATTTCAGAGAGAGAGAGAGAGAGAAGGCCAATCTTACTACCCCAATTC
CATCCCCCTTTGCATATTCTCACTCACTCTCAAGTCTCAACTCAACTCATCAAGATATCA
TCATCATCAGAGAGGTTGTAGAAGCTACCTAGCTAGCTAGCTAGCCAAAAGAGATATCTT
TCAGAAGAAAGGAAGGAAGAAGAAGAAGAAGCAATGAGCAGTGGTGGTGGCTCCTCTCCA
ACATCATCCCCTTCTGTCTGCTCCAGATCATGGTCTATAAGTGAGGATTCGTTGAAGAGG
TACGTGAGCTACGCGAGCGAGAGCTGCATCCAGGAGCTCCTCGCCGCGTCGGACTCCGGC
GGCGGCGGCGGCGGCGGCGACGATGGGTGGAAGGTGCTCGCGTACTGCAACGGCGTGGAG
ATATCGAAGCGGCGGGCCGGGGCGGCGCACGTCTTCCGGAGCCGGTGGCTGCTGCACGCC
GTCTCGCCGGGGAAGTTCATGGCCGTCGCCAACGCCGTCGACGCCGCCAAGCAGTGGGAG
TCGGACCTGGTGGACGCCCGGTACATCAGGGAGCTGGGCGACGACCTGAGCATCGTCCAC
CTCAAGCTCGGCGCCGACGCCTCCAAGCGCACCGCCGGCCTCTTCCGCCGCCGCGACGTC
GTCGTCTACGAGCGCCGCCAGACCATGGACGACGGCACGCTGGTGGTCGCCGTGGCGTCG
CTGCCCAAGGAGATCGCCGCGGGCCTCCTGCCCCCCGGCTCCTCCTCCGGCGCCCGCGGC
GCCGGCCTGCTGCTCCAGTCCGGCTGGGTCGTCGAGAAGCTCGACGCCGGCGACGGCGGC
GACGGCCCGCCCTGCTGCGTCGTCACCTACGTCGTGCAGCTCGACCCCGCCGCCGGGTGG
CTGCCCCGGTGCTTCGTCAGCCGGCTCAACAGCAAGCTCGTCATCATGATCGTCGCCAAG
CTCAAGAAGATGGCCCTCGCCACCATGCACTCCGCCGCCGCCGACGACGGCGAGGTGATG
CCATGAGTTTAGTTAGGAAGGAGAGAGATCATCTGGATTAATTAATTCCGGCGATCGATC
GATGTGGCACTGTGGCTACAAGCTCGCCGTCGTCGTCGTCTTCGTACGTGAGTAAATACG
ATTTTGTAGAAGAGTGTGGTGTTGCGTGTGTGGAGGTGTTATTTGTGACATGCGTCGCTT
GCATGACATGCGTTTCAGCATCTCTCTATATATAAATATGAACTTTGAGAGTGAGAATTG
TTACCGTGTGT