Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0244800-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:7776681:7784137:-1 gene:Os11g0244800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Alfin-1. (Os11t0244800-01)
Sequence

ATGGACGGAGGCGGGGCGCACCGCACGCCGGAGGACGTGTTCCGGGACTTCCGCGCGCGG
CGGGCCGGGATGATCAAGGCGCTGACCACAGATGTGGAGAAGTTCTACCAGCAGTGCGAC
CCAGAGAAAGAGAATTTGTGTTTATATGGTCTTCCCAATGAGACATGGGAAGTGAACTTG
CCTGCTGAGGAGGTTCCTCCAGAGCTTCCAGAACCAGCTCTGGGAATTAATTTTGCTCGG
GATGGGATGGATGAGAAAGATTGGCTGTCACTTGTTGCGGTTCATAGTGATACCTGGCTG
CTAGCAGTAGCCTTTTACTTTGGAGCAAGATTCGGGTTTGACAAAGAATCCAGGAAACGG
CTTTTTAGCATGATTAACAACCTTCCAACCATATATGAGGTTGTCACTGGGACTGCAAAG
AAGCAGAGCAAAGAAAAAACCCCCAAGACCAGTGGCAAGAGCAATAAATCCGGCACGAAG
CCATCGCGCCAGCCGGAACCCAACTCTAGGGGTCCAAAGATGCCACCTCCGAAGGATGAG
GATGATAGCGGAGGTGAGGAAGAGGAGGAAGAAGAAGATCACGAAAACACATTATGTGGT
GCATGTGGTGACAACTATGGACAGGATGAGTTCTGGATCTGCTGCGATGCTTGTGAGACA
TGGTTCCACGGTAAGTGTGTCAAGATAACCCCTGCCAAGGCTGAGCACATCAAGCACTAC
AAGTGCCCGAACTGCAGCAGTAGTAGCAAGAGAGCCAGAGCTTGA

Peptide Sequence

PEP ID

Os11t0244800-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:7776681:7784137:-1 gene:Os11g0244800 transcript:Os11t0244800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Alfin-1. (Os11t0244800-01)
Sequence

MDGGGAHRTPEDVFRDFRARRAGMIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEVNL
PAEEVPPELPEPALGINFARDGMDEKDWLSLVAVHSDTWLLAVAFYFGARFGFDKESRKR
LFSMINNLPTIYEVVTGTAKKQSKEKTPKTSGKSNKSGTKPSRQPEPNSRGPKMPPPKDE
DDSGGEEEEEEEDHENTLCGACGDNYGQDEFWICCDACETWFHGKCVKITPAKAEHIKHY
KCPNCSSSSKRARA

Transcript Sequence

Transcript ID

Os11t0244800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:7776681:7784137:-1 gene:Os11g0244800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Alfin-1. (Os11t0244800-01)
Sequence

ATCTCTCTCTCTTCCAAAACCCTAACCCTAGCGGCGGGCGGGAGCGGCGGAGGAGGAGGG
CGCGGCGGCGGTGGGGTGGTAGTGGTGGTGGGTGGAATGGACGGAGGCGGGGCGCACCGC
ACGCCGGAGGACGTGTTCCGGGACTTCCGCGCGCGGCGGGCCGGGATGATCAAGGCGCTG
ACCACAGATGTGGAGAAGTTCTACCAGCAGTGCGACCCAGAGAAAGAGAATTTGTGTTTA
TATGGTCTTCCCAATGAGACATGGGAAGTGAACTTGCCTGCTGAGGAGGTTCCTCCAGAG
CTTCCAGAACCAGCTCTGGGAATTAATTTTGCTCGGGATGGGATGGATGAGAAAGATTGG
CTGTCACTTGTTGCGGTTCATAGTGATACCTGGCTGCTAGCAGTAGCCTTTTACTTTGGA
GCAAGATTCGGGTTTGACAAAGAATCCAGGAAACGGCTTTTTAGCATGATTAACAACCTT
CCAACCATATATGAGGTTGTCACTGGGACTGCAAAGAAGCAGAGCAAAGAAAAAACCCCC
AAGACCAGTGGCAAGAGCAATAAATCCGGCACGAAGCCATCGCGCCAGCCGGAACCCAAC
TCTAGGGGTCCAAAGATGCCACCTCCGAAGGATGAGGATGATAGCGGAGGTGAGGAAGAG
GAGGAAGAAGAAGATCACGAAAACACATTATGTGGTGCATGTGGTGACAACTATGGACAG
GATGAGTTCTGGATCTGCTGCGATGCTTGTGAGACATGGTTCCACGGTAAGTGTGTCAAG
ATAACCCCTGCCAAGGCTGAGCACATCAAGCACTACAAGTGCCCGAACTGCAGCAGTAGT
AGCAAGAGAGCCAGAGCTTGATGGTGGATCCCTCTATGGCTTATGTCTGAAGAACCAAGA
ATTTGACTCGCTGTAAAGACCCTCATGAGATAGAATGCCCAATGGATATGCATTCAGCTG
TTGGTTTTCAGTTTAGGACCAGCTTTAGGGTCTTTAATGTGTTGTTTGGTGTATGTCAAT
GGCATCAATTCTAGATTTTCTGTTAGTAGTAGAAACTAACTGTAATAGCTTATGCTTCTT
CAAGCCCTTCTAAGTGCACCTGTACTGGACTCTTTAGTGTTTTAGATTTGAATTGTGTAT
TTGTGTCAAACATGTACTCTTGTAGTTTGTTAAAAATTGCTTGTGGTCATTTATTCTC