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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0242400-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:7639863:7642949:-1 gene:Os11g0242400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Rieske. (Os11t0242400-01)
Sequence

ATGGCGTCCATCACCACCACCGCCGCAGCCGCAGCCGCCTCCTCCTTCCTCCACCGCCGC
CGCGTCGCCGCGTCCGCCTCGCCGCCCCCGCGCGCCACAGCCACAGCCACCCTGCGGCAC
CACCAGAGGGTCGTCGGTTGCCGCGCGGCGGAGGTGTCGGGGGCGGAGCCGTCGGCGGCG
GCGGGGGAGGCGAGCGGGGATGGGAACTGGGTGCCGGTGGTGCCGCTGGCGGCGCTGCCG
CGTGGGGAGCGGCGGGTGATCGTGCAGGACGGGGAGGAGATCCTGCTGCTGTGGTACAAG
GAGCAGGTGTACGCCGTCGAGAATCGATCCCCCGCCGAGGGCGCCTACACCGAGGGCCTC
CTCAACGCCAAGCTCACCCAGGACGGCTGCATTGTTTGCCCAACAACAGATAGTACATTT
GATCTTCGTACTGGTGAAATAAAGGAATGGTATCCCAACAACCCTGTTTTAAGGGCTCTT
ACACCTGCATTGAGAAAACTATTCGTGTACCCTGTGAAAATCGATGGGGAGAATATATAC
ATCAGTATCAAGGGGGCTGTTACCTCCGGTGGATCCGCAGAGATTATATTCAGTGGGAAA
GCACAACCTGGATTTACTGCATCCGATGTCAATATCGAAGAGGTGAGAATGGTGATTGAT
GAGGATGTCGGAGGTTTTGGTTTCACTAATAAGAATGAACTAATTAATGGGAAAGCCGCT
ATAATTGGCTTTCTCTTGTTAATAGACTTTGAACTTTTAACTGGGAAAGGCCTTCTCAAG
GGGACTGGTTTATTGGACTTCATATATGCAATCTCAAGAGCTTTCAGCTCATAA

Peptide Sequence

PEP ID

Os11t0242400-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:7639863:7642949:-1 gene:Os11g0242400 transcript:Os11t0242400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Rieske. (Os11t0242400-01)
Sequence

MASITTTAAAAAASSFLHRRRVAASASPPPRATATATLRHHQRVVGCRAAEVSGAEPSAA
AGEASGDGNWVPVVPLAALPRGERRVIVQDGEEILLLWYKEQVYAVENRSPAEGAYTEGL
LNAKLTQDGCIVCPTTDSTFDLRTGEIKEWYPNNPVLRALTPALRKLFVYPVKIDGENIY
ISIKGAVTSGGSAEIIFSGKAQPGFTASDVNIEEVRMVIDEDVGGFGFTNKNELINGKAA
IIGFLLLIDFELLTGKGLLKGTGLLDFIYAISRAFSS

Transcript Sequence

Transcript ID

Os11t0242400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:7639863:7642949:-1 gene:Os11g0242400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Rieske. (Os11t0242400-01)
Sequence

CCCCCTCAAACCCTAACCCCACCACGCGCCATCTCCGCATCCTCTCCACATGGCGTCCAT
CACCACCACCGCCGCAGCCGCAGCCGCCTCCTCCTTCCTCCACCGCCGCCGCGTCGCCGC
GTCCGCCTCGCCGCCCCCGCGCGCCACAGCCACAGCCACCCTGCGGCACCACCAGAGGGT
CGTCGGTTGCCGCGCGGCGGAGGTGTCGGGGGCGGAGCCGTCGGCGGCGGCGGGGGAGGC
GAGCGGGGATGGGAACTGGGTGCCGGTGGTGCCGCTGGCGGCGCTGCCGCGTGGGGAGCG
GCGGGTGATCGTGCAGGACGGGGAGGAGATCCTGCTGCTGTGGTACAAGGAGCAGGTGTA
CGCCGTCGAGAATCGATCCCCCGCCGAGGGCGCCTACACCGAGGGCCTCCTCAACGCCAA
GCTCACCCAGGACGGCTGCATTGTTTGCCCAACAACAGATAGTACATTTGATCTTCGTAC
TGGTGAAATAAAGGAATGGTATCCCAACAACCCTGTTTTAAGGGCTCTTACACCTGCATT
GAGAAAACTATTCGTGTACCCTGTGAAAATCGATGGGGAGAATATATACATCAGTATCAA
GGGGGCTGTTACCTCCGGTGGATCCGCAGAGATTATATTCAGTGGGAAAGCACAACCTGG
ATTTACTGCATCCGATGTCAATATCGAAGAGGTGAGAATGGTGATTGATGAGGATGTCGG
AGGTTTTGGTTTCACTAATAAGAATGAACTAATTAATGGGAAAGCCGCTATAATTGGCTT
TCTCTTGTTAATAGACTTTGAACTTTTAACTGGGAAAGGCCTTCTCAAGGGGACTGGTTT
ATTGGACTTCATATATGCAATCTCAAGAGCTTTCAGCTCATAAGGATGCTTCTTCTTTGG
TGTAGAATGTTGTCCATGTACATCACTCATGTAAGTCTAGATTTTATTTCTACATACCTT
TGTATTTCATGTTATGTTTGTCTCTGTTTTAAGTACAGTGTAAGATATATTTTCCATAAT
CCCTCATGAAACATCTGAAGGTGTATATATTCTTCCTTCAAAAAGGGTATAAATATTTAC
CACTGCACATTT