Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os11t0235200-01
CDS Infomation	cds chromosome:IRGSP-1.0:11:7193230:7198486:-1 gene:Os11g0235200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SHORT PANICLE 1 description:Peptide transporter (PTR) family transporter, Proton oligopeptide tansporter (POT), Panicle elongation (Os11t0235200-01)
Sequence	ATGGATGTTGAGTCAAGGCAAGGCCCCAAGGGTGGTGACACCATGGCTGCCTCCGAGGTC TCCGTGGACTGGAGGGGCAGGCCTTGCGGCTCTCGCAAGCATGGCGGCATGAAAGCGGCC GTCTTTGTGCTAGGGATCCAGGCGTTCGAGATGATGGCGATCGCGGCGGTGGGGAACAAC CTGATCACCTACGTCTTCAACGAGATGCACTACCCGCTGTCAAAGTCGGCCAACATCGTG ACCAACTTCATTGGCACCGTCTTCCTCCTCTCCCTCCTCGGTGGCTTCCTCTCCGACTCC TACCTCGGAAGCTTCTGGACCATGCTCATCTTCGGCTTCGTCGAGCTCTCCGGGTTCATA CTGCTGGCCGTGCAGGCGCACCTGCCGCAGCTGCGGCCGCCGGCGTGCGACATGATGGCG GCGGCGGCGGCGGAGGGGGGATGCGAGGAGGCGAGCGGGGTGAAGGCGGGGATCTTCTTC GCGGCGCTGTACCTGGTGGCGCTGGGGAGCGGGTGCCTCAAGCCCAACATCATCGCGCAC GGCGCCGACCAGTTCCGGCGCGGCGGCGGCGGCGGCGGCGACGGCGATGGCGACGATGGC GGCGACGGGAAGCGGCTGTCGAGCTACTTCAACGCGGCCTACTTCAGCTTCTGCGTGGGG GAGCTGGTGGCGCTGACGGTGCTGGTGTGGGTGCAGACGAGGTCGGGGATGGACGTGGGG TTCGGGGTGTCGGCGGCCGCCATGGCCGTGGGGCTGGTCAGCCTCGTCGCCGGCGTCTTC TTCTACCGGAACAAGCCGCCGCAGGGCAGCATCTTCATGCCCATCGCCAAGGTTTTCGTC GCGGCGGTAACCAAGAGGAAACAAGTGTGCCCATCATCATCGTCGACGACAGCCGCCTCG CATGCTGTGATCCCCGCCACCGGTGCCGCCCCTGTCCACCGCATCAACAAATTCAGGTTC TTGGACAAGGCGTGCGTGAAGGTTCAGGACGGCCATGGCGGCGGCGGCGACGGGGGGAAG GAGAGCGTGTGGCCGCCGTGCACGCCGGCGGAGGTGGAGCAGGTGAAGGTGCTACTGTGC GTGGTGCCCATCTTCGCGTGCACCATCGTCTTCAACACCATCCTGGCGCAGCTGCAGACG TTCTCCGTGCAGCAGGGCTCCGCCATGGACACCCGCATCGGCGGCGGCGGCGGCGGCGCC GCCTTCCACATCCCGCCGGCGTCGCTGCAGGCCATCCCCTACCTCGTCCTCATCGCGCTG GTGCCGGCGTACGAGGCGTGCTTCGTGCCGGCCATGCGCCGCGCCACGGGCGTGGACACC GGCATCACCCCGCTCCAGCGGATCGGGGTCGGCCTCTTCGCCGTCACCTTCTCCATGGTC GCCGCCGCGCTCGTCGAGGCACACCGCCGCCGCCACGCCGGCGACGGGCTCCTCTCCATC TTCTGGATCGCGCCGCAGTTCCTGGTGTTCGGCGTGTCCGAGATGTTCACCGCCGTGGGG CTCATCGAGTTCTTCTACAAGCAGTCGCTCTCCGGCATGCAGGCCTTCCTCACCTCAATG ACCTACTGCTCCTACTCCTTCGGCTTCTACCTCAGCTCCCTCCTCGTCTCGCTCGTCAAC AAGGTCACCTCGGGCGACGGCGCCGGCGCCGGCGGCGGCGGCTGGCTCAGCGACAACGAC CTCAACAAGGACAGGCTCGACCTCTTCTACTGGCTCCTCGCCGGGCTCAGCCTCCTCAAC TTCTTCAACTACCTCTTCTGGTCGAGGTGGTACTCCAAGAGTGTGGAGACGACCGTGCAG GTCGCCGGAGTTGGAGGAGAAGGCGGCGGCGGCGAGCAGCAGGAGGAGAAGGGTGTTGAC GAGGTCAACATGGGTCACTGA

Peptide Sequence

PEP ID	Os11t0235200-01
PEP Infomation	pep chromosome:IRGSP-1.0:11:7193230:7198486:-1 gene:Os11g0235200 transcript:Os11t0235200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SHORT PANICLE 1 description:Peptide transporter (PTR) family transporter, Proton oligopeptide tansporter (POT), Panicle elongation (Os11t0235200-01)
Sequence	MDVESRQGPKGGDTMAASEVSVDWRGRPCGSRKHGGMKAAVFVLGIQAFEMMAIAAVGNN LITYVFNEMHYPLSKSANIVTNFIGTVFLLSLLGGFLSDSYLGSFWTMLIFGFVELSGFI LLAVQAHLPQLRPPACDMMAAAAAEGGCEEASGVKAGIFFAALYLVALGSGCLKPNIIAH GADQFRRGGGGGGDGDGDDGGDGKRLSSYFNAAYFSFCVGELVALTVLVWVQTRSGMDVG FGVSAAAMAVGLVSLVAGVFFYRNKPPQGSIFMPIAKVFVAAVTKRKQVCPSSSSTTAAS HAVIPATGAAPVHRINKFRFLDKACVKVQDGHGGGGDGGKESVWPPCTPAEVEQVKVLLC VVPIFACTIVFNTILAQLQTFSVQQGSAMDTRIGGGGGGAAFHIPPASLQAIPYLVLIAL VPAYEACFVPAMRRATGVDTGITPLQRIGVGLFAVTFSMVAAALVEAHRRRHAGDGLLSI FWIAPQFLVFGVSEMFTAVGLIEFFYKQSLSGMQAFLTSMTYCSYSFGFYLSSLLVSLVN KVTSGDGAGAGGGGWLSDNDLNKDRLDLFYWLLAGLSLLNFFNYLFWSRWYSKSVETTVQ VAGVGGEGGGGEQQEEKGVDEVNMGH

Transcript Sequence

Transcript ID	Os11t0235200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:11:7193230:7198486:-1 gene:Os11g0235200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SHORT PANICLE 1 description:Peptide transporter (PTR) family transporter, Proton oligopeptide tansporter (POT), Panicle elongation (Os11t0235200-01)
Sequence	GCCTGACCACACAAGCACAAAGCAAGCACTATCACCAAAAGGATCAGAGAAGAAACTGAT ATCACTATCTGATCAGTGTAGCATTGCAGCCTCTCTTCTTGGTAGGAGTGAGCTAGCACA GTGAAGAGCTAATTAAGCCATTTGTGTGAGCTTGCGTTGAGTGAGCTCTGAGCTAATATG GATGTTGAGTCAAGGCAAGGCCCCAAGGGTGGTGACACCATGGCTGCCTCCGAGGTCTCC GTGGACTGGAGGGGCAGGCCTTGCGGCTCTCGCAAGCATGGCGGCATGAAAGCGGCCGTC TTTGTGCTAGGGATCCAGGCGTTCGAGATGATGGCGATCGCGGCGGTGGGGAACAACCTG ATCACCTACGTCTTCAACGAGATGCACTACCCGCTGTCAAAGTCGGCCAACATCGTGACC AACTTCATTGGCACCGTCTTCCTCCTCTCCCTCCTCGGTGGCTTCCTCTCCGACTCCTAC CTCGGAAGCTTCTGGACCATGCTCATCTTCGGCTTCGTCGAGCTCTCCGGGTTCATACTG CTGGCCGTGCAGGCGCACCTGCCGCAGCTGCGGCCGCCGGCGTGCGACATGATGGCGGCG GCGGCGGCGGAGGGGGGATGCGAGGAGGCGAGCGGGGTGAAGGCGGGGATCTTCTTCGCG GCGCTGTACCTGGTGGCGCTGGGGAGCGGGTGCCTCAAGCCCAACATCATCGCGCACGGC GCCGACCAGTTCCGGCGCGGCGGCGGCGGCGGCGGCGACGGCGATGGCGACGATGGCGGC GACGGGAAGCGGCTGTCGAGCTACTTCAACGCGGCCTACTTCAGCTTCTGCGTGGGGGAG CTGGTGGCGCTGACGGTGCTGGTGTGGGTGCAGACGAGGTCGGGGATGGACGTGGGGTTC GGGGTGTCGGCGGCCGCCATGGCCGTGGGGCTGGTCAGCCTCGTCGCCGGCGTCTTCTTC TACCGGAACAAGCCGCCGCAGGGCAGCATCTTCATGCCCATCGCCAAGGTTTTCGTCGCG GCGGTAACCAAGAGGAAACAAGTGTGCCCATCATCATCGTCGACGACAGCCGCCTCGCAT GCTGTGATCCCCGCCACCGGTGCCGCCCCTGTCCACCGCATCAACAAATTCAGGTTCTTG GACAAGGCGTGCGTGAAGGTTCAGGACGGCCATGGCGGCGGCGGCGACGGGGGGAAGGAG AGCGTGTGGCCGCCGTGCACGCCGGCGGAGGTGGAGCAGGTGAAGGTGCTACTGTGCGTG GTGCCCATCTTCGCGTGCACCATCGTCTTCAACACCATCCTGGCGCAGCTGCAGACGTTC TCCGTGCAGCAGGGCTCCGCCATGGACACCCGCATCGGCGGCGGCGGCGGCGGCGCCGCC TTCCACATCCCGCCGGCGTCGCTGCAGGCCATCCCCTACCTCGTCCTCATCGCGCTGGTG CCGGCGTACGAGGCGTGCTTCGTGCCGGCCATGCGCCGCGCCACGGGCGTGGACACCGGC ATCACCCCGCTCCAGCGGATCGGGGTCGGCCTCTTCGCCGTCACCTTCTCCATGGTCGCC GCCGCGCTCGTCGAGGCACACCGCCGCCGCCACGCCGGCGACGGGCTCCTCTCCATCTTC TGGATCGCGCCGCAGTTCCTGGTGTTCGGCGTGTCCGAGATGTTCACCGCCGTGGGGCTC ATCGAGTTCTTCTACAAGCAGTCGCTCTCCGGCATGCAGGCCTTCCTCACCTCAATGACC TACTGCTCCTACTCCTTCGGCTTCTACCTCAGCTCCCTCCTCGTCTCGCTCGTCAACAAG GTCACCTCGGGCGACGGCGCCGGCGCCGGCGGCGGCGGCTGGCTCAGCGACAACGACCTC AACAAGGACAGGCTCGACCTCTTCTACTGGCTCCTCGCCGGGCTCAGCCTCCTCAACTTC TTCAACTACCTCTTCTGGTCGAGGTGGTACTCCAAGAGTGTGGAGACGACCGTGCAGGTC GCCGGAGTTGGAGGAGAAGGCGGCGGCGGCGAGCAGCAGGAGGAGAAGGGTGTTGACGAG GTCAACATGGGTCACTGACATGTGGGTTCGAACCGCACGTCTAGTATATTAGGTGGATTA TTAATCATTTAACCTAGTCTTAACCTTTTTTTTATGGTTTTTCCTTGTATGGAAAAATAT TAGTAAGGGTGGATGTATATGAGTCCCCACCTAATTAAGGAGAGTGTGTGTGATGTATAA ATTAATTAATCAAAAGGGATTAGGTGATTATTACTTAGTAATGATCCCTGATTAGGTCAA GTCAAAAGGTAGTAGTTCTGAGTTTGACTCTGCAAGGATGCAAGAGTAGTGGTATTTGGG TAGGGATCAAGTGATCAAGTACGTATCTAGTCCTTTTCTTTAATGATAAGGAGCTAGTAT ATATCTATGTACTTTATATATGTAGCTATCATGTAAATGACAAAAGGATTTGCCATAAAA GCAAAGTACTGATAATAGTTGGTGCAAAAAATACTTTCACTGTTGATC