Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os11t0234200-01
CDS Infomation	cds chromosome:IRGSP-1.0:11:7125124:7128857:-1 gene:Os11g0234200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os11t0234200-01)
Sequence	ATGGCGGTGCGGAGACGGGGGGCGTCGGCGGTGGCCGTGCACGGCGGCGGCGGCCGGGTG CCGAAGCGGGCGCGGGTGACGGCGGAGCCGTCGCTGCTCGACGTGCGGGCGTTCCCGGGG CAGAAGGAGGAGGGGGAGAAGCAGCCGGCGCGCGGCGGCGGGAAGAAGTCGTCGTCGTCG TCGTCGACGTTCCGGGCCCAGGTGAGGGGGTTCCTGGCGCGGTGCGCGGTGGCGGTGCCG GCGTCGGAGGCGGGTGAGTTGTCGCCGGGCATGTCGTCGTGGCACGTGGGGTTTACCACC GCCGGCGGCGAGGCGGTGGCGGTGATGGAGGTGGTGGAGGAGGAGGTGGCCAGGGCCAGG CGGGTCTACTGCGAGCACTGCACTGTTGCCGGCTGGAGCAAGCACCCTGTTTGCTCCAAG AGGTACCACTTCATAATTCGCAATGAGAATGAAACTGGCACCTCCAAAACCTGCAGGCGT TGCGGGTTCATGGTGGCACTGCAGGAAACAAGATGTCCGTCCTGCAACCACGTTGGCCTC TCACGGGATGATCCGGAAGATTGGGACTATGTGCAGCTGGAGAGTCCACGGCATCTGCTG CATGGCATAGTCCATGAAAACGGGTTTGGCCACCTTGTTCGGATTAATGGCCGTGAGGGA GGCTCCAGCGTCATGACAGGATCCCAACTGATTAACTTCTGGGATCGGCTCTGCAGATAC CTCAGGGTCAGAAAAGTCTCAGTGATAGATGTTTCGAAGAAGTATGGAGCTGACTACCGA AGCCTCCATGCTGTTGCCACTGGCTGTTCTTGGTATGGCCTGTGGGGATTCAAACTTAGC AGCGGAAGCTTTGGAATCACACCTCAAGACTACTCCAAAGCTGTAGAAAGCCTATCCTCA GTGCCACTCTCTAACTTCTTCCCTCACACCCGATCTCCACGAAACCAGTTACAAAATACC ATTGCATTCTACCAATCTCTCTCAAGGCACCCTCTCACCACAATCCGTGAACTGTTCGCC TATATAATGGAGCTTGCCACCGGCAAGAGTGTGCACAAAGAGAAAATGGCATATGATGCC AATTATCAAGAGGAATTCCCTGAAGAGGAATTACAGCGAGCAACAAACATTGCTCTCAAA ATTCTCCGTGCTGCAGATAGATGGGTTGCTACACGGACACTAAAGGCAGTTACATCCCAT CCAATTGGTTCGCCACAGCTGGTCGATTACTGCATCAAGACCCTTGGTGGTACAAGAACT GACGATGGGATGGTTGTTGCAATTCGATGCAACAGTGAGATGAACACTGTAGAGTACAGG CTTACGACTGAAACCCTCTTCCCACCAAACAACGTGTGCACCCTAACCCAAGACCACCTA TTCCGTGACATCAAGTTCTTGTATGATGCGCTTCTCTACCCATACACAATGCATCCTTAT ATGCCAGAAGAAAATTATCAGCATGCCAAGAGGTCTGCAATGATCCTTTTGGACTGCAAG CAATTCATCAAGCATTATGATCTGGAAGAAGACTTCTTACCTCAAAACCCATCCCAGTTG CACATTTGGTGCCAAGTGGAACTAGCTGACCAGGTTGATGATCCACCTTGTATCCCAGCA GAGCTCATAACTCTTCCACAGGCAGCAACTATCGCTGATCTCAAAGGGGAGGCTGCGAGA GCATTTCGAGACATCTACCTAATGTTACAGAGTTTTGTAGCTGACCAGCTTCTTGATTGT GCAACTGCAAGCGACACAACACAAATCAAGCTCTTGTTTGGAGCAAAGGGGGCTGTCCAC ATCAAAGGCAGGTGCATTGGTGGTGAAAGACGGTTTGCAATTTACCGGATGGAGAGGGGT GTGGACAAATGGACAGTTAAATGCTCCTGTGGAGCAACGGACGATGACGGTGAGAGAATG CTATCCTGTGACACTTGCCATATGTGGATGCACACTAGGTGTGCTGGAATCAGTGATTTT GATAGGGTTCCAAAGAGATATGTATGTAAATCATGTAAACTAACCCACAAGCCGAAGAGC AGTGGTCCTAGGCTCATGTATAGTAGTGCACCTAACAAAAGATGTAAGACTGGCACAGGT TCCTTTAGCAATGCGGCTGAAGGATTACTGTGGCCTCAAATCAGCTAA

Peptide Sequence

PEP ID	Os11t0234200-01
PEP Infomation	pep chromosome:IRGSP-1.0:11:7125124:7128857:-1 gene:Os11g0234200 transcript:Os11t0234200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os11t0234200-01)
Sequence	MAVRRRGASAVAVHGGGGRVPKRARVTAEPSLLDVRAFPGQKEEGEKQPARGGGKKSSSS SSTFRAQVRGFLARCAVAVPASEAGELSPGMSSWHVGFTTAGGEAVAVMEVVEEEVARAR RVYCEHCTVAGWSKHPVCSKRYHFIIRNENETGTSKTCRRCGFMVALQETRCPSCNHVGL SRDDPEDWDYVQLESPRHLLHGIVHENGFGHLVRINGREGGSSVMTGSQLINFWDRLCRY LRVRKVSVIDVSKKYGADYRSLHAVATGCSWYGLWGFKLSSGSFGITPQDYSKAVESLSS VPLSNFFPHTRSPRNQLQNTIAFYQSLSRHPLTTIRELFAYIMELATGKSVHKEKMAYDA NYQEEFPEEELQRATNIALKILRAADRWVATRTLKAVTSHPIGSPQLVDYCIKTLGGTRT DDGMVVAIRCNSEMNTVEYRLTTETLFPPNNVCTLTQDHLFRDIKFLYDALLYPYTMHPY MPEENYQHAKRSAMILLDCKQFIKHYDLEEDFLPQNPSQLHIWCQVELADQVDDPPCIPA ELITLPQAATIADLKGEAARAFRDIYLMLQSFVADQLLDCATASDTTQIKLLFGAKGAVH IKGRCIGGERRFAIYRMERGVDKWTVKCSCGATDDDGERMLSCDTCHMWMHTRCAGISDF DRVPKRYVCKSCKLTHKPKSSGPRLMYSSAPNKRCKTGTGSFSNAAEGLLWPQIS

Transcript Sequence

Transcript ID	Os11t0234200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:11:7125124:7128857:-1 gene:Os11g0234200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os11t0234200-01)
Sequence	GAAAATTTTCAAACCCCCTCGGCGACCAAACCAGAGCGCGGGGGGGCGATGGCGGTGCGG AGACGGGGGGCGTCGGCGGTGGCCGTGCACGGCGGCGGCGGCCGGGTGCCGAAGCGGGCG CGGGTGACGGCGGAGCCGTCGCTGCTCGACGTGCGGGCGTTCCCGGGGCAGAAGGAGGAG GGGGAGAAGCAGCCGGCGCGCGGCGGCGGGAAGAAGTCGTCGTCGTCGTCGTCGACGTTC CGGGCCCAGGTGAGGGGGTTCCTGGCGCGGTGCGCGGTGGCGGTGCCGGCGTCGGAGGCG GGTGAGTTGTCGCCGGGCATGTCGTCGTGGCACGTGGGGTTTACCACCGCCGGCGGCGAG GCGGTGGCGGTGATGGAGGTGGTGGAGGAGGAGGTGGCCAGGGCCAGGCGGGTCTACTGC GAGCACTGCACTGTTGCCGGCTGGAGCAAGCACCCTGTTTGCTCCAAGAGGTACCACTTC ATAATTCGCAATGAGAATGAAACTGGCACCTCCAAAACCTGCAGGCGTTGCGGGTTCATG GTGGCACTGCAGGAAACAAGATGTCCGTCCTGCAACCACGTTGGCCTCTCACGGGATGAT CCGGAAGATTGGGACTATGTGCAGCTGGAGAGTCCACGGCATCTGCTGCATGGCATAGTC CATGAAAACGGGTTTGGCCACCTTGTTCGGATTAATGGCCGTGAGGGAGGCTCCAGCGTC ATGACAGGATCCCAACTGATTAACTTCTGGGATCGGCTCTGCAGATACCTCAGGGTCAGA AAAGTCTCAGTGATAGATGTTTCGAAGAAGTATGGAGCTGACTACCGAAGCCTCCATGCT GTTGCCACTGGCTGTTCTTGGTATGGCCTGTGGGGATTCAAACTTAGCAGCGGAAGCTTT GGAATCACACCTCAAGACTACTCCAAAGCTGTAGAAAGCCTATCCTCAGTGCCACTCTCT AACTTCTTCCCTCACACCCGATCTCCACGAAACCAGTTACAAAATACCATTGCATTCTAC CAATCTCTCTCAAGGCACCCTCTCACCACAATCCGTGAACTGTTCGCCTATATAATGGAG CTTGCCACCGGCAAGAGTGTGCACAAAGAGAAAATGGCATATGATGCCAATTATCAAGAG GAATTCCCTGAAGAGGAATTACAGCGAGCAACAAACATTGCTCTCAAAATTCTCCGTGCT GCAGATAGATGGGTTGCTACACGGACACTAAAGGCAGTTACATCCCATCCAATTGGTTCG CCACAGCTGGTCGATTACTGCATCAAGACCCTTGGTGGTACAAGAACTGACGATGGGATG GTTGTTGCAATTCGATGCAACAGTGAGATGAACACTGTAGAGTACAGGCTTACGACTGAA ACCCTCTTCCCACCAAACAACGTGTGCACCCTAACCCAAGACCACCTATTCCGTGACATC AAGTTCTTGTATGATGCGCTTCTCTACCCATACACAATGCATCCTTATATGCCAGAAGAA AATTATCAGCATGCCAAGAGGTCTGCAATGATCCTTTTGGACTGCAAGCAATTCATCAAG CATTATGATCTGGAAGAAGACTTCTTACCTCAAAACCCATCCCAGTTGCACATTTGGTGC CAAGTGGAACTAGCTGACCAGGTTGATGATCCACCTTGTATCCCAGCAGAGCTCATAACT CTTCCACAGGCAGCAACTATCGCTGATCTCAAAGGGGAGGCTGCGAGAGCATTTCGAGAC ATCTACCTAATGTTACAGAGTTTTGTAGCTGACCAGCTTCTTGATTGTGCAACTGCAAGC GACACAACACAAATCAAGCTCTTGTTTGGAGCAAAGGGGGCTGTCCACATCAAAGGCAGG TGCATTGGTGGTGAAAGACGGTTTGCAATTTACCGGATGGAGAGGGGTGTGGACAAATGG ACAGTTAAATGCTCCTGTGGAGCAACGGACGATGACGGTGAGAGAATGCTATCCTGTGAC ACTTGCCATATGTGGATGCACACTAGGTGTGCTGGAATCAGTGATTTTGATAGGGTTCCA AAGAGATATGTATGTAAATCATGTAAACTAACCCACAAGCCGAAGAGCAGTGGTCCTAGG CTCATGTATAGTAGTGCACCTAACAAAAGATGTAAGACTGGCACAGGTTCCTTTAGCAAT GCGGCTGAAGGATTACTGTGGCCTCAAATCAGCTAACATGTACATAACGATAACAAGGAT TCATATGAGCCATGCCAGTTTTTCATGGCTGCAATTATGTAAACATTTGTAATGGTAAGT TGCCTGATGTCTCATGAACTTAATTGAGAAAAATTTTATCAGC