Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0221000-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:6335893:6342309:1 gene:Os11g0221000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:IAA27 description:Aux/IAA_ARF_dimerisation domain containing protein. (Os11t0221000-01)
Sequence

ATGATGAATCTTATATCATTTGAAACACCTCCTCTTGGGAGGAGGAGTCAAGATGGAGGC
AGCAGCAGCAGCAGCATCACTGCTGCTACAACCACTACCAACAAGGCAAAGGAAGCAGCA
AGCCATCTAGACCTCAGCCTCGGCATCTCCTTGTCACCCGGCGGCGGCGGCGGCGACGCT
GGCACCAAGGCCAGCAGCTGCTGCTACGGCGGCGGCGGCGACGGCGGCGGCTGCATGGGC
AGTGGCATGCTCACTGCAGGAGTTCTTGGCGTTGGGCATGGGGGGAGTAGCCATGACAAT
ACTACGGCGAGCAGCGGCGGCGGCGGCAGCTGGACGGCGGCGTTCATGCCGAGCCCGACG
GGATTCATGCACCCGTGGAGCCTCGCCGCCCGGCAGCAGAAGGCCGCCGCCGAGCAGGAG
CGGAGCGGCGTCGCGAGGCTGCCGCCGGCGACGACGACGTACATGCCAAGAGCTGCCGCG
ACCGTGATTTCACTGCCGGCGGCAGTTGGCTGGCCACCGGTGCACACATCCCGGCGTAAC
CTCGTTGCCACCATAAATAATGTCCTGAAACCCGACACTACTGCCGCCGTCAAGCCGGAC
AGACCGACACAAGCAACGGCGATGTTCGCCGCCGACGAAACCACGGCGCCCCCGCCAAGG
AGCGCGGCGGCGGCGACCGAGGCCAGCAGGACATTGAACATGTTTGCCAAGGTGCACATG
GATGGGTACAAGGTGGGCAGGAAGATCAACCTCAGGGCACACCGCAACTACGACTCCCTC
CGTCGGGTCCTCACCAAGATGACTCATAATTTCTTCTGCCGTGAGTACCCTATATTTCTT
TTTTACTTTTTTTTAATTACTGGATAG

Peptide Sequence

PEP ID

Os11t0221000-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:6335893:6342309:1 gene:Os11g0221000 transcript:Os11t0221000-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:IAA27 description:Aux/IAA_ARF_dimerisation domain containing protein. (Os11t0221000-01)
Sequence

MMNLISFETPPLGRRSQDGGSSSSSITAATTTTNKAKEAASHLDLSLGISLSPGGGGGDA
GTKASSCCYGGGGDGGGCMGSGMLTAGVLGVGHGGSSHDNTTASSGGGGSWTAAFMPSPT
GFMHPWSLAARQQKAAAEQERSGVARLPPATTTYMPRAAATVISLPAAVGWPPVHTSRRN
LVATINNVLKPDTTAAVKPDRPTQATAMFAADETTAPPPRSAAAATEASRTLNMFAKVHM
DGYKVGRKINLRAHRNYDSLRRVLTKMTHNFFCREYPIFLFYFFLITG

Transcript Sequence

Transcript ID

Os11t0221000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:6335893:6342309:1 gene:Os11g0221000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:IAA27 description:Aux/IAA_ARF_dimerisation domain containing protein. (Os11t0221000-01)
Sequence

ATCAACCACTAGTGCACCATCTTATATTCTTCCTACATATTCATTCTCCCCACAACAACA
ACTAACACTACTCACTCTTCATTGCTTTTTTTTTTCTCTCTCTAGCTAGCTAGCTTGCTT
CTACTTCTTCTTCATCTTGATCTTGAAACTAGTCTTATCAATCTGAGGAATTAATCCATC
ATTATGATGAATCTTATATCATTTGAAACACCTCCTCTTGGGAGGAGGAGTCAAGATGGA
GGCAGCAGCAGCAGCAGCATCACTGCTGCTACAACCACTACCAACAAGGCAAAGGAAGCA
GCAAGCCATCTAGACCTCAGCCTCGGCATCTCCTTGTCACCCGGCGGCGGCGGCGGCGAC
GCTGGCACCAAGGCCAGCAGCTGCTGCTACGGCGGCGGCGGCGACGGCGGCGGCTGCATG
GGCAGTGGCATGCTCACTGCAGGAGTTCTTGGCGTTGGGCATGGGGGGAGTAGCCATGAC
AATACTACGGCGAGCAGCGGCGGCGGCGGCAGCTGGACGGCGGCGTTCATGCCGAGCCCG
ACGGGATTCATGCACCCGTGGAGCCTCGCCGCCCGGCAGCAGAAGGCCGCCGCCGAGCAG
GAGCGGAGCGGCGTCGCGAGGCTGCCGCCGGCGACGACGACGTACATGCCAAGAGCTGCC
GCGACCGTGATTTCACTGCCGGCGGCAGTTGGCTGGCCACCGGTGCACACATCCCGGCGT
AACCTCGTTGCCACCATAAATAATGTCCTGAAACCCGACACTACTGCCGCCGTCAAGCCG
GACAGACCGACACAAGCAACGGCGATGTTCGCCGCCGACGAAACCACGGCGCCCCCGCCA
AGGAGCGCGGCGGCGGCGACCGAGGCCAGCAGGACATTGAACATGTTTGCCAAGGTGCAC
ATGGATGGGTACAAGGTGGGCAGGAAGATCAACCTCAGGGCACACCGCAACTACGACTCC
CTCCGTCGGGTCCTCACCAAGATGACTCATAATTTCTTCTGCCGTGAGTACCCTATATTT
CTTTTTTACTTTTTTTTAATTACTGGATAGACACAGACGCACACACGTATCACTAGACTC
GTAACACCACACTTACACCTCCACAAATACACTCCCTAATATATCATTATCTCATTAAAT
TCTGAGTACCCCATATTTCAACTCTATCTACAACAAAGTGCCTTGGTATCATATCTATCT
GTTCTTTAACTCCATAGATATATAATATATATTTTACAAGGGAAATAGGTAGAGTTAGTT
ATGTGTATGATTTAGGGTAGATACCAAACACATTAAAATGATTCTGGTCCCGTGACCAAG
ATAGAATTAATTAAAATGCAGACATGGCCCATGAATCGTATTATGTGACATGAGCAAACT
AAACATAGTTTGGTCCCACCTCATAGAGTCATAGGTTTTGTCTTTTTAAGGAAGGTTAGA
GCATGCTAATTGTTTAGGTCCAATTGAATTTACAGGTCACCCCTTGAGCAGTCAAACAAG
TTCTTCAAACTCTGTAGTAATTTGTGCTAGTCCAACTAGCCTCTCAAGAGTTATTTGCTC
ATTTTTCTCCATTTGTTTGAATGAACATGTCACAATAATATCTTGCAACTCAATAGTTAA
TTTATATCTTGCATGTTTTTAGAAGAGTCAACCATCTCGGCCCTCGTGATTACCCCATGA
TTGTGCTAGGTTTTAATTCATTTACCTTTAATTAACTATGCCATTGTAAGTTTTTCTAGT
TTGGGTTTTTTTATAAATTAAATCAAATCTATTCTTCTATAGTAATTTGCATAAGCTCCC
TACCCTTTTCGAAGGTTATGCGTACACGGAACATCCAACCTATAATGACTTGGCTAGAAA
TAATATCTAAGTAAAAAATGTTCCAAGTAATGAAGTGAATGCTATATTGCTTTTGGATTT
TTTTTATTGTACTACTAATATAAGGTATTAAAATGATTGTTCAAAATACTAAGTTCTTTT
TCATTTCACAAAATTCAGCCGCAGATTATTCAAGCACAAATAAGGGAGAAGAAGATTGTG
CTAAAAGTGACGAGTTCATATTTCTATATGAAGATTTTGAGGGCGACCGAATGCTTGTTG
GCGATGTCCCATGGGAGTAAGTATTTTTGTTAAAATAATTGATAGCTTTTTTATGCACTA
TTGTTGTTACAAAGTAATCCATCTCACTTAAGTTGTTGTCTCATGTACAAGTTATTGTTT
CATGTTAATTTGTTACTTCACAAATGCCATCCATAATAATATCGAAAGTGTAATAAAATG
TTTCTCGTATAAGGGTGCAATAACATTCTTGGGGCTCATGAGGGAAATATGTTACTATGT
CTGACTCACTAGTTCATTAATATTGTTTGCACATTCATAATTAATAAGATGTAAAAGGAG
AAAACCTTACTACACAATTAGTTTTCGAATATACAACAACTTTAAAATGCCCAAGTAACT
GTGCAATTTTGTAGGTTGTTCCTTGCATCAGCAAAAAGGTTGTACATTGCCAAAAACCCA
GCACCCAGAAACAAAGGTACCTACAGACCTCTTGTCTGGATATGCATGCTGCTTCCAAAA
GCTCCATATTGAAATGCTTCTTTTACGTGTTTGCTGTGCAATTACTTTGCAGAACATGCT
GAAATCGCCAAAAGGAAAGAAACTGAAGATGCAATAGATAACTGAAGGCACCTGAAAAGC
AAGTTGATCTCTGCATATACTACAATATGCACTTCTCATGATCTGACATATATAGCTCTC
GACTTGTGCTGTTCATCTTGTATTATAATAAGCTATCTTCGAAGAGTAGGTTTATAATGT
ACGGATGCATGTTAAAATGCTTCTTGATCACTGTGCATACAATTTTGCGGGCATTAGGTA
AGTACTCTGAAAAATGTACTAGACACGGATTCAGTATGTCTACACAAAGTGGATAAGACT
CGTCTAATAATTAACTACGTTCTTGCTTGCTATATTTTCCATCC