Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0216300-02
CDS Infomation

cds chromosome:IRGSP-1.0:11:6068242:6071393:-1 gene:Os11g0216300 gene_biotype:protein_coding transcript_biotype:protein_coding description:ABC-1 domain containing protein. (Os11t0216300-01);Similar to ABC1 family protein, expressed. (Os11t0216300-02)
Sequence

GTTCAGAGGCCAGGAATTGAGCCCATCATATATCGAGATCTTTTCCTGTTCCGAACTCTC
GCATCCTTTTTGAATGGAATTAGCCTTCAAAAACTAGGCTGCAATGCAGAGCTTATTGTG
GATGAATTCGGTGAAAAACTTTTGGAAGAACTTGATTACACCCTTGAAGCTACAAACATC
GAGGACTTCTTGGAAAATTTCAAGGATGATCCAACTGTCAAGATCCCTCAAGTATATAAG
CAGTATTCAGGTTCTCGTGTTTTAGTAATGGAATGGATAGATGGAATCAGATGCACTGAC
CCACAGGCTATAAAAGAAGCAGGTATTGATGTGGAGGGCTTTCTCACAGTTGGAGTAAGT
GCTGCATTGCGTCAGTTGCTTGAATTTGGCCTTTTCCATGGAGATCCACATCCTGGAAAT
ATCTTTGCGATGCGTGATGGTCGTATTGCTTATGTTGACTTTGGCAATGTGGCTGTCCTA
AGTCAGCAAAACAAACAAATCCTAATCGATGCTGTTGTTCATGCTGTAAATGAAGACTAT
GCTGAAATGGCAAATGACTTCACAAGGCTTGGCTTTCTTGCTAGTGGAACAGATGTGTCC
CCAATTGTCCCAGCTCTGGAAGCTATTTGGCAAAACTCAGCCGGGAAAGGCTTAGCAGAC
TTCAATTTCCGGAGTGTAACCGGGAAGTTTAATCAGCTTGTGTACAATTACCCCATCCGC
ATCCCAGAAAGGTTTTCTTTGGTTATTCGTTCATTGTTGACACAAGAAGGGATTTGCTTC
ACTCTGCAGCCTGATTTTAAGTTTCTTGAGGTTGCATATCCATATGTAGCAAAGCGTCTC
TTGACAGATCCAAACCCTGCTCTCCGTGAACGGCTGATACAGGTATTATTCAAAGATGGT
CTGTTCCAATGGAAACGGCTAGAAAACCTTATAGTTCTTGCCAAGGAAAACGTGTCCAAG
ATGAGCAGCAATCCTGCACTAAAAAAGAATAGCTCGCAAATTGAGAGAAATCGACAAATG
GAGAAGAAATTAGATCTCACCGACACAATAAAAGACGGAGCACGTTTGTTCCTTATCGAC
GCTGGCATCAGGAGACAACTTATTATGGCTTTCACGGAGGACTCCAAGTTGCATGTAGAA
GAGCTTGTTGATGTGTACAGACTGGTCGAAGATCAAATCGACATTCCATCAGTTGCTCTC
GAGGTTATCCAAGATTTACCATCCGTCGCGCGCGATTTCATGCTTTCTTGGAGCGATTCC
ATCCTGTCAGATCGGCAATACTGA

Peptide Sequence

PEP ID

Os11t0216300-02
PEP Infomation

pep chromosome:IRGSP-1.0:11:6068242:6071393:-1 gene:Os11g0216300 transcript:Os11t0216300-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:ABC-1 domain containing protein. (Os11t0216300-01);Similar to ABC1 family protein, expressed. (Os11t0216300-02)
Sequence

VQRPGIEPIIYRDLFLFRTLASFLNGISLQKLGCNAELIVDEFGEKLLEELDYTLEATNI
EDFLENFKDDPTVKIPQVYKQYSGSRVLVMEWIDGIRCTDPQAIKEAGIDVEGFLTVGVS
AALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAVLSQQNKQILIDAVVHAVNEDY
AEMANDFTRLGFLASGTDVSPIVPALEAIWQNSAGKGLADFNFRSVTGKFNQLVYNYPIR
IPERFSLVIRSLLTQEGICFTLQPDFKFLEVAYPYVAKRLLTDPNPALRERLIQVLFKDG
LFQWKRLENLIVLAKENVSKMSSNPALKKNSSQIERNRQMEKKLDLTDTIKDGARLFLID
AGIRRQLIMAFTEDSKLHVEELVDVYRLVEDQIDIPSVALEVIQDLPSVARDFMLSWSDS
ILSDRQY

Transcript Sequence

Transcript ID

Os11t0216300-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:6068242:6071393:-1 gene:Os11g0216300 gene_biotype:protein_coding transcript_biotype:protein_coding description:ABC-1 domain containing protein. (Os11t0216300-01);Similar to ABC1 family protein, expressed. (Os11t0216300-02)
Sequence

AGGTTCAGAGGCCAGGAATTGAGCCCATCATATATCGAGATCTTTTCCTGTTCCGAACTC
TCGCATCCTTTTTGAATGGAATTAGCCTTCAAAAACTAGGCTGCAATGCAGAGCTTATTG
TGGATGAATTCGGTGAAAAACTTTTGGAAGAACTTGATTACACCCTTGAAGCTACAAACA
TCGAGGACTTCTTGGAAAATTTCAAGGATGATCCAACTGTCAAGATCCCTCAAGTATATA
AGCAGTATTCAGGTTCTCGTGTTTTAGTAATGGAATGGATAGATGGAATCAGATGCACTG
ACCCACAGGCTATAAAAGAAGCAGGTATTGATGTGGAGGGCTTTCTCACAGTTGGAGTAA
GTGCTGCATTGCGTCAGTTGCTTGAATTTGGCCTTTTCCATGGAGATCCACATCCTGGAA
ATATCTTTGCGATGCGTGATGGTCGTATTGCTTATGTTGACTTTGGCAATGTGGCTGTCC
TAAGTCAGCAAAACAAACAAATCCTAATCGATGCTGTTGTTCATGCTGTAAATGAAGACT
ATGCTGAAATGGCAAATGACTTCACAAGGCTTGGCTTTCTTGCTAGTGGAACAGATGTGT
CCCCAATTGTCCCAGCTCTGGAAGCTATTTGGCAAAACTCAGCCGGGAAAGGCTTAGCAG
ACTTCAATTTCCGGAGTGTAACCGGGAAGTTTAATCAGCTTGTGTACAATTACCCCATCC
GCATCCCAGAAAGGTTTTCTTTGGTTATTCGTTCATTGTTGACACAAGAAGGGATTTGCT
TCACTCTGCAGCCTGATTTTAAGTTTCTTGAGGTTGCATATCCATATGTAGCAAAGCGTC
TCTTGACAGATCCAAACCCTGCTCTCCGTGAACGGCTGATACAGGTATTATTCAAAGATG
GTCTGTTCCAATGGAAACGGCTAGAAAACCTTATAGTTCTTGCCAAGGAAAACGTGTCCA
AGATGAGCAGCAATCCTGCACTAAAAAAGAATAGCTCGCAAATTGAGAGAAATCGACAAA
TGGAGAAGAAATTAGATCTCACCGACACAATAAAAGACGGAGCACGTTTGTTCCTTATCG
ACGCTGGCATCAGGAGACAACTTATTATGGCTTTCACGGAGGACTCCAAGTTGCATGTAG
AAGAGCTTGTTGATGTGTACAGACTGGTCGAAGATCAAATCGACATTCCATCAGTTGCTC
TCGAGGTTATCCAAGATTTACCATCCGTCGCGCGCGATTTCATGCTTTCTTGGAGCGATT
CCATCCTGTCAGATCGGCAATACTGATCTCAGGTTAACAGTTTAGAGCAGCAAGCAGAAG
TGCTGTCAAGACCTGCAGGAGCCATTCTTCCTTCAGTTAACCTACACTAAAATAGATAGA
TATAGATGACTACATTTTTCCTCTTTGCTGTACACAATTTGGTTTGCTATTCTTTTCTAT
AGTATATCATTGTATAGGAAACTTGCCATCTGCATTTCATTTATATATTTTCGATGGCTC
TGTATATGCCGTTTGTATAGCGGAAGAAAAGGAACTTGTATATAGAATGAGCTTGTATTG
TGGGAGAAAGTAGCTATATGTGTACATCGAGGAAACTTACATTATAAGATCAGATCATAT
GTTTTGC