Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0215400-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:6020972:6024097:-1 gene:Os11g0215400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidase aspartic, catalytic domain containing protein. (Os11t0215400-01)
Sequence

ATGGCTAGGAGGATTATTTTCCTACTGTTCCTCATAGCGTGTGTAGTCGACAGAAGCGTC
AACGTGCATTGCGAGAAGCAACTTGTGTCATCGTTCGACAAACATGACAACGCATCGTCT
TCACTAGCTGAGCTGTTCTCTGGGAAAAGGATACCCCTTTTCCGATATATCACCAACAAA
ACATCAAGGCTATCAACTAAAGCTGTACAGGTCGGATGGGATCGAGGGCTACAAACATCC
CTATATGTCATATCAGTTGGGCTTGGCACACCAGCCAAGACACAGATCGTAGAGATAGAC
ACCGGGAGCTCCACATCCTGGGTCTTCTGCGAGTGCGACGGCTGCCACACCAACCCCCGA
ACATTTCTGCAGTCAAGGTCTACCACATGTGCCAAGGTGTCCTGTGGCACTTCCATGTGC
TTGCTTGGAGGCAGTGATCCCCACTGCCAAGATTCAGAGAACTATCCTGACTGCCCATTC
CGTGTTTCATATCAAGATGGATCGGCCTCCTATGGCATTCTGTACCAGGACACCCTGACA
TTCTCTGATGTTCAGAAGATCCCCGGCTTCTCGTTCGGCTGCAACATGGACAGCTTCGGC
GCCAACGAATTCGGCAATGTGGATGGGTTACTCGGGATGGGTGCTGGCCCAATGTCCGTG
CTGAAGCAAAGCTCACCGACATTCGACTGCTTCTCCTACTGCCTGCCGCTGCAGAAGAGC
GAGAGGGGATTCTTCAGCAAGACCACAGGCTATTTCAGCTTGGGCAAAGTCGCAACAAGA
ACAGATGTCAGGTACACGAAGATGGTCGCACGCAAGAAAAACACAGAATTGTTCTTCGTT
GATCTCACCGCGATCTCTGTCGATGGAGAGAGGCTCGGCTTGTCGCCGAGCGTCTTCAGT
CGAAAGGGCGTCGTGTTCGACTCAGGTTCAGAGCTGTCCTACATCCCAGACCGTGCGTTG
TCCGTGCTGAGCCAGCGGATTCGCGAGCTGCTGCTGAAACGCGGGGCGGCGGAGGAGGAG
AGCGAGCGCAACTGCTACGACATGAGGAGTGTTGATGAGGGGGACATGCCAGCCATATCC
CTGCACTTCGATGATGGAGCTCGGTTCGATCTCGGCAGCCATGGCGTGTTCGTCGAGAGA
TCGGTGCAGGAGCAGGACGTGTGGTGCCTGGCGTTTGCGCCGACTGAATCTGTCTCCATT
ATAGGAAGCCTGATGCAGACTTCCAAGGAGGTTGTGTATGACTTGAAAAGGCAGCTGATT
GGCATTGGACCATCAGGAGCTTGTTAG

Peptide Sequence

PEP ID

Os11t0215400-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:6020972:6024097:-1 gene:Os11g0215400 transcript:Os11t0215400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidase aspartic, catalytic domain containing protein. (Os11t0215400-01)
Sequence

MARRIIFLLFLIACVVDRSVNVHCEKQLVSSFDKHDNASSSLAELFSGKRIPLFRYITNK
TSRLSTKAVQVGWDRGLQTSLYVISVGLGTPAKTQIVEIDTGSSTSWVFCECDGCHTNPR
TFLQSRSTTCAKVSCGTSMCLLGGSDPHCQDSENYPDCPFRVSYQDGSASYGILYQDTLT
FSDVQKIPGFSFGCNMDSFGANEFGNVDGLLGMGAGPMSVLKQSSPTFDCFSYCLPLQKS
ERGFFSKTTGYFSLGKVATRTDVRYTKMVARKKNTELFFVDLTAISVDGERLGLSPSVFS
RKGVVFDSGSELSYIPDRALSVLSQRIRELLLKRGAAEEESERNCYDMRSVDEGDMPAIS
LHFDDGARFDLGSHGVFVERSVQEQDVWCLAFAPTESVSIIGSLMQTSKEVVYDLKRQLI
GIGPSGAC

Transcript Sequence

Transcript ID

Os11t0215400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:6020972:6024097:-1 gene:Os11g0215400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidase aspartic, catalytic domain containing protein. (Os11t0215400-01)
Sequence

AAGCACCATGGCTAGGAGGATTATTTTCCTACTGTTCCTCATAGCGTGTGTAGTCGACAG
AAGCGTCAACGTGCATTGCGAGAAGCAACTTGTGTCATCGTTCGACAAACATGACAACGC
ATCGTCTTCACTAGCTGAGCTGTTCTCTGGGAAAAGGATACCCCTTTTCCGATATATCAC
CAACAAAACATCAAGGCTATCAACTAAAGCTGTACAGGTCGGATGGGATCGAGGGCTACA
AACATCCCTATATGTCATATCAGTTGGGCTTGGCACACCAGCCAAGACACAGATCGTAGA
GATAGACACCGGGAGCTCCACATCCTGGGTCTTCTGCGAGTGCGACGGCTGCCACACCAA
CCCCCGAACATTTCTGCAGTCAAGGTCTACCACATGTGCCAAGGTGTCCTGTGGCACTTC
CATGTGCTTGCTTGGAGGCAGTGATCCCCACTGCCAAGATTCAGAGAACTATCCTGACTG
CCCATTCCGTGTTTCATATCAAGATGGATCGGCCTCCTATGGCATTCTGTACCAGGACAC
CCTGACATTCTCTGATGTTCAGAAGATCCCCGGCTTCTCGTTCGGCTGCAACATGGACAG
CTTCGGCGCCAACGAATTCGGCAATGTGGATGGGTTACTCGGGATGGGTGCTGGCCCAAT
GTCCGTGCTGAAGCAAAGCTCACCGACATTCGACTGCTTCTCCTACTGCCTGCCGCTGCA
GAAGAGCGAGAGGGGATTCTTCAGCAAGACCACAGGCTATTTCAGCTTGGGCAAAGTCGC
AACAAGAACAGATGTCAGGTACACGAAGATGGTCGCACGCAAGAAAAACACAGAATTGTT
CTTCGTTGATCTCACCGCGATCTCTGTCGATGGAGAGAGGCTCGGCTTGTCGCCGAGCGT
CTTCAGTCGAAAGGGCGTCGTGTTCGACTCAGGTTCAGAGCTGTCCTACATCCCAGACCG
TGCGTTGTCCGTGCTGAGCCAGCGGATTCGCGAGCTGCTGCTGAAACGCGGGGCGGCGGA
GGAGGAGAGCGAGCGCAACTGCTACGACATGAGGAGTGTTGATGAGGGGGACATGCCAGC
CATATCCCTGCACTTCGATGATGGAGCTCGGTTCGATCTCGGCAGCCATGGCGTGTTCGT
CGAGAGATCGGTGCAGGAGCAGGACGTGTGGTGCCTGGCGTTTGCGCCGACTGAATCTGT
CTCCATTATAGGAAGCCTGATGCAGACTTCCAAGGAGGTTGTGTATGACTTGAAAAGGCA
GCTGATTGGCATTGGACCATCAGGAGCTTGTTAGTTAGTTATTGGGTTGTGTGTGTGTAT
ATATATATATATAGAGTAGCTCTATTGTACACCCCTCCCTTAGAATAACTATTCTACACC
TCCA