Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0199600-02
CDS Infomation

cds chromosome:IRGSP-1.0:11:4991002:4992888:-1 gene:Os11g0199600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, CCHC-type domain containing protein. (Os11t0199600-02)
Sequence

ATGTCTGGAAATGACGATAAGTCTCAGGCTGCAGCTGAGAGAATAAAAGCACAGGCCTTA
TCTGCTGCCAAGGGATTGAGCAGAACTCAAGCCGAGCGAGCTGCTGCAGCCGCTGCCCGC
AATGTCAATGCTTATGGGCAGAAAGAAGAGGGACCTTCGCGCTGGCAGGAGAGGAAGGAG
GCCAAGAGACAGATGTATCTGATGAGTACAGAGAAGGCTGTGATACTGGGAGTGAAACCA
AAAGCTGCGCAAACTTCTTCTTCTTCTGGTGGCGCATATACCCAGTGCCAGAAGTGTTTT
CAGCCTGGGCACTGGACATACGAGTGCAAGAACGAACGGGTCTACATTTCGCGGCCCTCG
AGGACACAGCAGCTCAAGAACCCCAAGCTGAAGAAGACGGCTGCTCCTGTTTCCTATCAG
TTCCAGAATCCTGATCTTGAGAAGGAAAAGGAAGAGGAAAGGAAGCTGATGAAAGCAAAG
TTGAAGAAGGAGAAGTCTGAGAAAAGCAAACGGAAAAGCAAGAGAAAATACCGTTCACGG
AGTGATTCAGATAGTAGTGAGGCTTCTGTATTTGACTCTGACAGTGAATCATCAGTTACC
GGCTCTGAATATTCTTCTGGAAGTAGCTCAAGCTACAGCTCCTCAGACTCGGAGGACAAG
AAGCGGCGACCCAAAAGGAAGCAGCAGAAGAGGAGGCACAGAAGGGAAACCTCATCATCA
GCATCGTCTGAATCTGACTCCGAATCTGCATCTGCATCTGACAGTGATTCTGATGACAAG
GGCAGCCGAAAGAAGAGCAGGAAGCGAAGCGCTAGGCGCTGA

Peptide Sequence

PEP ID

Os11t0199600-02
PEP Infomation

pep chromosome:IRGSP-1.0:11:4991002:4992888:-1 gene:Os11g0199600 transcript:Os11t0199600-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, CCHC-type domain containing protein. (Os11t0199600-02)
Sequence

MSGNDDKSQAAAERIKAQALSAAKGLSRTQAERAAAAAARNVNAYGQKEEGPSRWQERKE
AKRQMYLMSTEKAVILGVKPKAAQTSSSSGGAYTQCQKCFQPGHWTYECKNERVYISRPS
RTQQLKNPKLKKTAAPVSYQFQNPDLEKEKEEERKLMKAKLKKEKSEKSKRKSKRKYRSR
SDSDSSEASVFDSDSESSVTGSEYSSGSSSSYSSSDSEDKKRRPKRKQQKRRHRRETSSS
ASSESDSESASASDSDSDDKGSRKKSRKRSARR

Transcript Sequence

Transcript ID

Os11t0199600-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:4991002:4992888:-1 gene:Os11g0199600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, CCHC-type domain containing protein. (Os11t0199600-02)
Sequence

GTGAGTTCGCCCGCCGCCTCGCCTGCGCCGATCTCCATCGAACTCGGCGAGCAGCCGAGG
CGGACCTGCTGCCTCCTTCCGCCGCAAGCATCCTCGCCGCCGGATCATAATATTGCTGAT
TTTGTATGATTTGATTCTTGTTGGGTGAGCCCAAGATGTCTGGAAATGACGATAAGTCTC
AGGCTGCAGCTGAGAGAATAAAAGCACAGGCCTTATCTGCTGCCAAGGGATTGAGCAGAA
CTCAAGCCGAGCGAGCTGCTGCAGCCGCTGCCCGCAATGTCAATGCTTATGGGCAGAAAG
AAGAGGGACCTTCGCGCTGGCAGGAGAGGAAGGAGGCCAAGAGACAGATGTATCTGATGA
GTACAGAGAAGGCTGTGATACTGGGAGTGAAACCAAAAGCTGCGCAAACTTCTTCTTCTT
CTGGTGGCGCATATACCCAGTGCCAGAAGTGTTTTCAGCCTGGGCACTGGACATACGAGT
GCAAGAACGAACGGGTCTACATTTCGCGGCCCTCGAGGACACAGCAGCTCAAGAACCCCA
AGCTGAAGAAGACGGCTGCTCCTGTTTCCTATCAGTTCCAGAATCCTGATCTTGAGAAGG
AAAAGGAAGAGGAAAGGAAGCTGATGAAAGCAAAGTTGAAGAAGGAGAAGTCTGAGAAAA
GCAAACGGAAAAGCAAGAGAAAATACCGTTCACGGAGTGATTCAGATAGTAGTGAGGCTT
CTGTATTTGACTCTGACAGTGAATCATCAGTTACCGGCTCTGAATATTCTTCTGGAAGTA
GCTCAAGCTACAGCTCCTCAGACTCGGAGGACAAGAAGCGGCGACCCAAAAGGAAGCAGC
AGAAGAGGAGGCACAGAAGGGAAACCTCATCATCAGCATCGTCTGAATCTGACTCCGAAT
CTGCATCTGCATCTGACAGTGATTCTGATGACAAGGGCAGCCGAAAGAAGAGCAGGAAGC
GAAGCGCTAGGCGCTGAGTTTGAAGAACTGGAGCAGGCAACAAGGACATCAATTACGATG
ATATAGTACTATGTCTAAATATCATTTCTTCTCGTCAAAATCGTAGATGCATGTACCAGG
CATCCTCCGACAAGCATGTAACAATTTAGGTGCAGGGCGAGTACTGTTCTATCCTCGATT
GTAACAATTTCTATCCTCAACTCAGGTCCAGGGCGAGTACTGTTCTTTTTTCCATTCTAC
AATGAAGTAGTATTTGAAGCTCTAGATCTTCGTGTTGTTTGTATGCCGTTAATCATTTTG
AGAACCTGTGAATCATGCAACAATGTTTTATCTCCCAATTTCTATGTTTGGCTCGCTTAT
CTTCCTGAAAGTTTTCTGTAATCATC