Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0198100-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:4918870:4923725:1 gene:Os11g0198100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to EMB2756. (Os11t0198100-01)
Sequence

ATGGCGCAGTACAGGCAGTCGGGCGGCTTCTTCGACTACCGCGGCGGCCACCACCACGCG
CTCCCGGAGTACCACCGGCCCCTCCCGCACGCCTCCAAGCCGTCCCGGATCCGCCGCCCC
GGGAAGCCCGCGCGCCGCCGCTCGCCGGCCGCGGCCGCCGCCGTCGCGTCCGCGCTCCTC
CTCGCCGGCGTGTTCCTCCTCTCGCGCCGCCTCTCCCGCCAACCCGCAGAGATCAGCCAA
GATTTGGGCGGCGGCGGGGAGGGGTTACCGGAGTGGAACCGGAGCAAGGAGCTCAAGTTC
GGCCATGGCGGTGGAGGCCGGAGCGCGCAGGATTCGAGGTACTGGGACCGGGACGATCGG
AGGCGGGACGAGGACTACTCGGAGGACGAGAAGGAGAAGATCTCGGGTGCAAGTGGAAAT
AATGCCGGTGTCAGTGATAAGGTTGTGACCTCTGATCCTGCTGTTGAGGAGAAAGGGTTG
ACCATGGATACCGGCGGTGCCGCCGATAAGGAGGCTGCTGAGGTAGCTGAAGGTGGGAAA
GGAGGGACCTTGTACAATGAAGGGGGCAGGAAAGAGCTCGAGCAGTATGAGGCGGCTGCG
ATGGGAGCTGCGGGTACTGGGATCAGGGAGGTTGATCCGGATGATGAGTATGACGATGGC
ATTGATGCACAGGACGATCTTGATGATGCTCAGTCGCATTCATCTGATGGCGGGAGGAAG
CTTGGCGACAGTAGTCATGAGAGCACCGAGAGTAAGGAAAATATAGCTCATGATAGCACC
GGCAATAAGGAAAGCATCGCCTTAGAGAGACGCACGGAAACAGGTGCGGGTATTAGTGAT
GGTGTCGATGTTATTGATGCTGCTAATGTGAACCAAAAGAAGGTTTCGGCGACTGGTGAT
AAGAAACACGCGTCAAAAAAGAAATCAAAGCGCAAGAAGACTGGTTCAACTTGTGAAATG
AGGTTTCTGAACTCCACTGCTCAACTCGTAGAGCCTGCTAAAAATGAGAAATTTGCTAGT
TTTAATTTGGAATATGTGGAAGTTGAAGACAAACCTCTTGGATCAGAGTATTGGGAGCCA
AGATTTGCTGGCCACCAGAGTTTACAAGAAAGAGAGGAATCATACTTAGCTCATGACCAA
CAATTAAATTGTGCTTTTGTTAAGGGTCCCAATGGTACAAGCACTGGTTTTGATATCTCA
GAGGAAAACAGAAAGTACATGAGCAAATGCCACATTGCAGTATCTTCCTGCATCTTTGGA
AATTCTGATCGTCTGAAGACTCCTTTTGGGAAAACAGTATGTTCTTTTTCTGTACCAACA
AACTCCTGA

Peptide Sequence

PEP ID

Os11t0198100-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:4918870:4923725:1 gene:Os11g0198100 transcript:Os11t0198100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to EMB2756. (Os11t0198100-01)
Sequence

MAQYRQSGGFFDYRGGHHHALPEYHRPLPHASKPSRIRRPGKPARRRSPAAAAAVASALL
LAGVFLLSRRLSRQPAEISQDLGGGGEGLPEWNRSKELKFGHGGGGRSAQDSRYWDRDDR
RRDEDYSEDEKEKISGASGNNAGVSDKVVTSDPAVEEKGLTMDTGGAADKEAAEVAEGGK
GGTLYNEGGRKELEQYEAAAMGAAGTGIREVDPDDEYDDGIDAQDDLDDAQSHSSDGGRK
LGDSSHESTESKENIAHDSTGNKESIALERRTETGAGISDGVDVIDAANVNQKKVSATGD
KKHASKKKSKRKKTGSTCEMRFLNSTAQLVEPAKNEKFASFNLEYVEVEDKPLGSEYWEP
RFAGHQSLQEREESYLAHDQQLNCAFVKGPNGTSTGFDISEENRKYMSKCHIAVSSCIFG
NSDRLKTPFGKTVCSFSVPTNS

Transcript Sequence

Transcript ID

Os11t0198100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:4918870:4923725:1 gene:Os11g0198100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to EMB2756. (Os11t0198100-01)
Sequence

ACCCTCCCGTCCATGTCCATGGTGGTCGAGCACCACCGGCGCGGCCACCGCGAGCTCCTC
CTCCCCCTCTAATGGCGCAGTACAGGCAGTCGGGCGGCTTCTTCGACTACCGCGGCGGCC
ACCACCACGCGCTCCCGGAGTACCACCGGCCCCTCCCGCACGCCTCCAAGCCGTCCCGGA
TCCGCCGCCCCGGGAAGCCCGCGCGCCGCCGCTCGCCGGCCGCGGCCGCCGCCGTCGCGT
CCGCGCTCCTCCTCGCCGGCGTGTTCCTCCTCTCGCGCCGCCTCTCCCGCCAACCCGCAG
AGATCAGCCAAGATTTGGGCGGCGGCGGGGAGGGGTTACCGGAGTGGAACCGGAGCAAGG
AGCTCAAGTTCGGCCATGGCGGTGGAGGCCGGAGCGCGCAGGATTCGAGGTACTGGGACC
GGGACGATCGGAGGCGGGACGAGGACTACTCGGAGGACGAGAAGGAGAAGATCTCGGGTG
CAAGTGGAAATAATGCCGGTGTCAGTGATAAGGTTGTGACCTCTGATCCTGCTGTTGAGG
AGAAAGGGTTGACCATGGATACCGGCGGTGCCGCCGATAAGGAGGCTGCTGAGGTAGCTG
AAGGTGGGAAAGGAGGGACCTTGTACAATGAAGGGGGCAGGAAAGAGCTCGAGCAGTATG
AGGCGGCTGCGATGGGAGCTGCGGGTACTGGGATCAGGGAGGTTGATCCGGATGATGAGT
ATGACGATGGCATTGATGCACAGGACGATCTTGATGATGCTCAGTCGCATTCATCTGATG
GCGGGAGGAAGCTTGGCGACAGTAGTCATGAGAGCACCGAGAGTAAGGAAAATATAGCTC
ATGATAGCACCGGCAATAAGGAAAGCATCGCCTTAGAGAGACGCACGGAAACAGGTGCGG
GTATTAGTGATGGTGTCGATGTTATTGATGCTGCTAATGTGAACCAAAAGAAGGTTTCGG
CGACTGGTGATAAGAAACACGCGTCAAAAAAGAAATCAAAGCGCAAGAAGACTGGTTCAA
CTTGTGAAATGAGGTTTCTGAACTCCACTGCTCAACTCGTAGAGCCTGCTAAAAATGAGA
AATTTGCTAGTTTTAATTTGGAATATGTGGAAGTTGAAGACAAACCTCTTGGATCAGAGT
ATTGGGAGCCAAGATTTGCTGGCCACCAGAGTTTACAAGAAAGAGAGGAATCATACTTAG
CTCATGACCAACAATTAAATTGTGCTTTTGTTAAGGGTCCCAATGGTACAAGCACTGGTT
TTGATATCTCAGAGGAAAACAGAAAGTACATGAGCAAATGCCACATTGCAGTATCTTCCT
GCATCTTTGGAAATTCTGATCGTCTGAAGACTCCTTTTGGGAAAACAGTATGTTCTTTTT
CTGTACCAACAAACTCCTGAAAAAATTATGATACCCCTAATCCTGCATGAGTTACAACCA
ATGTAACTCTTGTCAATGTATTTATTTTGGTTCTCTTGTATATTTTGGCAATCGCAAAAT
TAGCGTTCTTTGCATGATTTGTCTTAGAACCTTATAATCTCAGTAGCTTCATTTTTACCA
TAGGTACTTATTGGCTCTGTTAGTAGGCAATGAAACATAAACCTTATATAATAGGCCTGT
GAAATGCAACTGAACCTTCTGCAATGTTAGTTTGGATATACATGAATATATAACCTCAAT
CTCCATACTTAGGTTAAACAATTGCTGACCTTTCCATTCTGTTGTTCCAATGCTCCCTGA
ATCTTTTTAAATGCTTCAGAAGTTGATGGAAATCTGGTAATATTTAAGAAATAACTTCAT
ATGATATCTGTCTACGCAGATTACAAGTCTATCAAAGAAGACAGTATGCTTTGCTATGTT
TTTGGATGAAATCACATTACGAACTTTGGAATCTGAAGGCCAAAAAATGGATAGTTCAGG
TTTCATCGGTATATGGAAGATCATATTGATTAAGAATATGCCTTATAATGACATGCGGAG
AGTCGGCAAAATACCGAAATTTCTGGCACATCGTCTTTTCCCATCATCAAGGTTCTCAAT
CTGGTTAGACAGCAAATTGCGATTACAAAATGATCCTATCCTTATCCTAGAGTATTTTCT
TTGGCGGCATGGCTATGAATATGCTATTTCCAATCATTATGATCGACACTGTGTTTGGGA
GGAAGTGGCACAGAACAAAAGGCTGAACAAGTTCAACCATACAATAATTGATCAGCAGTT
TGAGTTTTACCAAGCAGATGGACTGACAAAGTTCAACCCATCGGATCCCAACAAGCTGCT
ACCAAGCTATGTCCCTGAAGGTTCTTTCATCGTGAGGGAACACACACCAATGTCCAACTT
ATTTTCATGCCTATGGTTCAATGAGGTTGATCGATTCACACCTCGTGACCAGCTCAGCTT
TGCATATACATATTTGAAGCTTAGAAGAATGAACCCGGAGAAGCCATTTCGCCTTAATAT
GTTTAAGGATTGTGAGAGGCGGTCAATAGCAAAGTTATTCCATCATCGATCAGAAGAGAG
ACGCAGCAGTCCACAACTAACAAGATGACAGAGATTCTTTCGGAATGGGTGGTGCAAGGA
TATTTTAGGATTTTACCTTTGATATAGCACAGGATGGCACAGGACTATTCAGTGTCAAGA
TTTATGCCCCTGCTGAGGAATTTAAGCCTAAAGGTCGCAAGCGATTCTACTCCTTTACTC
TATGATCCTGCAGACCAGTTCCTGCCGCCTTTCTATTTTGCACTTGACAAAGGCGGATTA
GGGAACTATGGCCGTTTGATTTTCGTAAATTCTTCTGCTCTCGGTAAAGTTTTGTTCATT
CTTTTGGGGTGATCTGGGACAAGTGGGGCATGAACTCCCAGAACTAGTTTAGCACTGTGT
ATTATCATATGGTTGTTAAAAGAACTACCAAGTGAAGACATGATTCCGATGTAATCCTCA
ATGGTCTTGTTGAAATGTAATACTACAACAGGAAACAAAACCTTCTGTAATTTCTCTGTG
ATAGCAAACTAGCAATTTTTTTTTGTCTGAATTTGTGGAATCTCCAGGCTTCCCTTGTGC
TTTTGCTAGATCAGAACTGAGAATGAATAAGTGATCATCTGTTTGTTTTTTGTTCCATGT
ACTACAGCTTGCTGCAATTGAGCATTCCTTCAACAATGAAGAAGTGACC