Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0197600-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:4894638:4899862:-1 gene:Os11g0197600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transcriptional factor B3 family protein. (Os11t0197600-01)
Sequence

ATGGTGGTTAGGGAAAAGCAAGGTGGCCGGATGGGGAAGGGGAAGGGGAAGGGGAAGGAG
AAGGAGTGCGACATTAACTGCTTCGGGAGGAGCTTCTTCCGTGTGCTTCTCACCCTGCAA
TCTCTGGAGCGGATGAAAATCCCATCATCATTCAACCAATGCCTTCAGAATCAACCTACT
GGGATGGTTTCTCTGGTTGATCGAAGTGGAAATAAATGGAGTGCAGAGCTGACTTCAGAC
TCTGAGGGATTCTTCTTTGTGCATGGATGGAAAGAATTTGTCAGAGATAACTCAATTCAG
TGTGGTCAATTTTTAGTATTCACTTATGATAAACGGTCACAATTCTCAGTGACAGTCTTT
GAACCTTCAGGCATTGACAAGATATCAACTTTCTCTGCTCACCCTTCCAAAAATGTGATC
ATTAAAACAGAAAGTGATGAAGGGGGCATGGTCACCGCAGCTATCACAACAGAGAAAATG
GCTCCCGCCCTGAAGGAAAATAATGGAATCACAGGAAAGAGAACTAGAGATGTAGATTAC
CTTATGGAAGATAGGGTGGTTGTATTTAAGAAGTCATCTGAGGCTAATGTTTGCGAAAGT
TCTAGGAGAAAACGTGCAGGAGCTTCTGCTGGCAAGTCCAAGGTAACATCGACAAGCCAT
AACAGTACCAGAGGTTCATCATGCAGCTCAGATGAAGATAATTCTTCTAGCAAGTCACCA
AATCCACCATTCCTGATGCGCTTTCTGTCTGGTGAGGTGTCTCGGCGTGGTAGATGTGTT
TCAAAGGGTCAAAGACAACTAACAGTAATATCACAGAGGCGTCCGGTAACTGAAGCAGAG
AAGGACCATGCTCTTCAAAGGGCAAGAGAGTTTAAATCTAAGAATCCTTTTGCCGTGCAA
ATAATGATGGAGTCATATGTCTATGTTGGATTTTTCATGAATATCCCATGTGAATTTGTC
CGTGAGTGTCTTCCCCATACCAACAAAAGGATCACACTCTGGGATCCACAAGGGAAGGCT
TGGGAAGTTAACTATGTCTACTACAGTGATCGTTCTGTTGGTTCTTTCAGTGGTGGCTGG
GGCAAATTTGCTGTTGGCAACAATCTGGAGAAGTTTGATGTGTGTGTCTTCGAGCTTGTC
CAGAAGGATAACATAAAAGTGCACATCTACAGAGTTGTCCCAGAAATTACTCCGCACAAA
CTCCGTTCTGACCCGAAGTAA

Peptide Sequence

PEP ID

Os11t0197600-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:4894638:4899862:-1 gene:Os11g0197600 transcript:Os11t0197600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transcriptional factor B3 family protein. (Os11t0197600-01)
Sequence

MVVREKQGGRMGKGKGKGKEKECDINCFGRSFFRVLLTLQSLERMKIPSSFNQCLQNQPT
GMVSLVDRSGNKWSAELTSDSEGFFFVHGWKEFVRDNSIQCGQFLVFTYDKRSQFSVTVF
EPSGIDKISTFSAHPSKNVIIKTESDEGGMVTAAITTEKMAPALKENNGITGKRTRDVDY
LMEDRVVVFKKSSEANVCESSRRKRAGASAGKSKVTSTSHNSTRGSSCSSDEDNSSSKSP
NPPFLMRFLSGEVSRRGRCVSKGQRQLTVISQRRPVTEAEKDHALQRAREFKSKNPFAVQ
IMMESYVYVGFFMNIPCEFVRECLPHTNKRITLWDPQGKAWEVNYVYYSDRSVGSFSGGW
GKFAVGNNLEKFDVCVFELVQKDNIKVHIYRVVPEITPHKLRSDPK

Transcript Sequence

Transcript ID

Os11t0197600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:4894638:4899862:-1 gene:Os11g0197600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transcriptional factor B3 family protein. (Os11t0197600-01)
Sequence

GCTTGTTTCCTATTTTCCTCTTCCCCTCGCATCGCAGCACAGCGGTAGGCATTTCGCTTC
CATTGCTTCTCCTCCTCCTCCGCCGCCGCCGCCGCTGCTGCTCGTCTTCCCTCTCCCGAC
CCGCCACCCGCCTCCTCGCCGGTTTGATTTTTTTTTTCTTTTTGTTCACCCGGCCGGGCG
GGGCGAGCTTGCGCTCTCTTTTCTTCCTTCCTTTTTCTTGGATTCTATTTCGGCTTTGGT
TGTTCGGTCGGGGGGGGGGGGGGGGCGCAAGAATCGGAGTAGGAGGTCATGGTGGTTAGG
GAAAAGCAAGGTGGCCGGATGGGGAAGGGGAAGGGGAAGGGGAAGGAGAAGGAGTGCGAC
ATTAACTGCTTCGGGAGGAGCTTCTTCCGTGTGCTTCTCACCCTGCAATCTCTGGAGCGG
ATGAAAATCCCATCATCATTCAACCAATGCCTTCAGAATCAACCTACTGGGATGGTTTCT
CTGGTTGATCGAAGTGGAAATAAATGGAGTGCAGAGCTGACTTCAGACTCTGAGGGATTC
TTCTTTGTGCATGGATGGAAAGAATTTGTCAGAGATAACTCAATTCAGTGTGGTCAATTT
TTAGTATTCACTTATGATAAACGGTCACAATTCTCAGTGACAGTCTTTGAACCTTCAGGC
ATTGACAAGATATCAACTTTCTCTGCTCACCCTTCCAAAAATGTGATCATTAAAACAGAA
AGTGATGAAGGGGGCATGGTCACCGCAGCTATCACAACAGAGAAAATGGCTCCCGCCCTG
AAGGAAAATAATGGAATCACAGGAAAGAGAACTAGAGATGTAGATTACCTTATGGAAGAT
AGGGTGGTTGTATTTAAGAAGTCATCTGAGGCTAATGTTTGCGAAAGTTCTAGGAGAAAA
CGTGCAGGAGCTTCTGCTGGCAAGTCCAAGGTAACATCGACAAGCCATAACAGTACCAGA
GGTTCATCATGCAGCTCAGATGAAGATAATTCTTCTAGCAAGTCACCAAATCCACCATTC
CTGATGCGCTTTCTGTCTGGTGAGGTGTCTCGGCGTGGTAGATGTGTTTCAAAGGGTCAA
AGACAACTAACAGTAATATCACAGAGGCGTCCGGTAACTGAAGCAGAGAAGGACCATGCT
CTTCAAAGGGCAAGAGAGTTTAAATCTAAGAATCCTTTTGCCGTGCAAATAATGATGGAG
TCATATGTCTATGTTGGATTTTTCATGAATATCCCATGTGAATTTGTCCGTGAGTGTCTT
CCCCATACCAACAAAAGGATCACACTCTGGGATCCACAAGGGAAGGCTTGGGAAGTTAAC
TATGTCTACTACAGTGATCGTTCTGTTGGTTCTTTCAGTGGTGGCTGGGGCAAATTTGCT
GTTGGCAACAATCTGGAGAAGTTTGATGTGTGTGTCTTCGAGCTTGTCCAGAAGGATAAC
ATAAAAGTGCACATCTACAGAGTTGTCCCAGAAATTACTCCGCACAAACTCCGTTCTGAC
CCGAAGTAACATTGCTATGTCGGCATGTTGGAGGCTTCAATTCCATTGATCTGAGGCTGT
AGTTGGCAGTTAAAAAACTATTTATATGTTGGTTTCTATAAAAAAAAACAAAATAAGTGC
CTAGTTCATAAGTGAACTATTGTTCCGGTTGGGTTGTTGAATGACTAGTTTAGACCTGGT
TGTATTGGTTAAGGAGTGTACTATTGTTGCGGACGTGCAGCCATTGTAATGCTAAAATGT
AACTTGCATTTTTTTTTGTGGCTGTATAATATTTTTACTGTTATGTTTCATGATATATGT
CATAGGTAGTTGATTTCATTCAGATTATCATCAAAGTATACTGGCCTGAGATCTGAAAAC
CAGATGGTGTGATATGCTTCACC