Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os11t0195500-01
CDS Infomation	cds chromosome:IRGSP-1.0:11:4785275:4789298:1 gene:Os11g0195500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:phytoalexin deficient 4 description:Hypothetical conserved gene. (Os11t0195500-01)
Sequence	ATGCTTCTTCTTCGTCGTCGTCTTGCCAGGTTCGAGACCAGCCACGTCCTCGGCGCGCTG CTCGCCTCCTCGCCGCTGCTGGCGCGGGCGTGGGACCGGTGCGCGGCCGCGGCCGACGGC GGCGCGTCGTCGCTGGGGTTCGTGCACGGCGGCGGCGGGGGAGGGGAAGGGGAGCCGGTG TGCGTGGCGTTCTCCGGGGTGCAGGCGGCGCTGTCGGCGGCGGCGGGCGGCGGCGGGGGC GCCGAGATCTTCAAGCCGGTCGGGCTCCGCGGGGACGCCGCCGGGCGGCTGTTCGCGCCG CTGGTCGCCGCCGAGCCGGAGGACGCCGGCGGGGAGCCGGTCGCCGTGCAGGCGCTGGCG CTGCAGGGGTTCTTGAGGCTGTGCAGATCCCCTGAATTCCAGGTGCTGCTGAACCAGATC AGAGGCAAGGCAGTAGTGTTCACTGGCCACTCCCTCGGTGGTGCCATTGCTGCCCTTGTG GCGCTGCACTACCTTTGCACATCATCGTCAAGCTCAGCATTTGCCCCTGCTCCTCCGGTG CTTTGTGTCACATTCGGGAGCCCGCTGCTTGGCAATCAGGCCCTGTCTAGGGCTATCCTG CGTGAGCGGTGGGCCGGCAACTTCTGCCATGTGGTCTCACAGCATGATGTTGTCCCAAGG CTCCTCTTCTGCCCACTCAATGTCATCCCTGTGCACATTGTTGTTGGTATGCAGCTGCAC CAGTTGCCGGTGCGCGCGCGCCGTGCAGCCGGTGTGGTGGCCACGGTCACTGCCCGCATG GCTGACACCAACCAGGAGTCGCTGCGGCAGCTGATCCAAGAGCACGCCGGTGAGGCAGCA ATTGAGCAGAAGCTTGCTGCTCCGGAAATACCCAGTGGGAGCCCATACCGGCCTTTTGGG GCGTATGTCCTGTGCTCTCCGGATGGTGCGGCGTGTGTCGACAATCCAACAGCAGCGGTT CAGATGCTATATGCAACATTTGCTGCAAGGCGTGCTCCAGAGACAGGCGCGGTGCCACCT GAGGCTGCACACTCCTGCTACGGTGACCTCGTGCTGAGCATGCCGCACCACTTGCTGCTC AAGAGGCGCCTTGGTGCCACAGTCACCGCACCTGCCGCGTCCAACTACGACGTCGGCATC TCCATTGCACTGGAGGCATCAGGTATCACCGGTGAAGCTACAGAGGCAGCACCGGCACGG CAGTGGCTGAAGACGTCGAAGCGCGTGGGCCGGAGCCCGAGCCTGAACTGTGCGAGCCTC GCAACGCGGTTGGGACGGATCACGCCGTGCCGAGCGCAGATCGAGTGGTACAAGGCATTG TTCGATGCCAACACCGGGTATTACGACGCATTCAAGCAGCGGCTATCACCTAAGAAGTTC AGCAAGGCCAACATGTACCGCATCAAGCTCGCACAGTTCTGGGATGGCGTCCTCTCCATG CTTGACACCAGCCAGCTCCCCTACGACTTCCACCGCCGTGCCAAGTGGGTCAACGCTGCC CACTTCTACCAGCTCCTTGTTGAGCCACTTGACATTGCCGACTACCACCGAAACAACCTA CACCGCACACGCGGCTCTTACATCACCCATGGCCGGGAGAGAAGGTAG

Peptide Sequence

PEP ID	Os11t0195500-01
PEP Infomation	pep chromosome:IRGSP-1.0:11:4785275:4789298:1 gene:Os11g0195500 transcript:Os11t0195500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:phytoalexin deficient 4 description:Hypothetical conserved gene. (Os11t0195500-01)
Sequence	MLLLRRRLARFETSHVLGALLASSPLLARAWDRCAAAADGGASSLGFVHGGGGGGEGEPV CVAFSGVQAALSAAAGGGGGAEIFKPVGLRGDAAGRLFAPLVAAEPEDAGGEPVAVQALA LQGFLRLCRSPEFQVLLNQIRGKAVVFTGHSLGGAIAALVALHYLCTSSSSSAFAPAPPV LCVTFGSPLLGNQALSRAILRERWAGNFCHVVSQHDVVPRLLFCPLNVIPVHIVVGMQLH QLPVRARRAAGVVATVTARMADTNQESLRQLIQEHAGEAAIEQKLAAPEIPSGSPYRPFG AYVLCSPDGAACVDNPTAAVQMLYATFAARRAPETGAVPPEAAHSCYGDLVLSMPHHLLL KRRLGATVTAPAASNYDVGISIALEASGITGEATEAAPARQWLKTSKRVGRSPSLNCASL ATRLGRITPCRAQIEWYKALFDANTGYYDAFKQRLSPKKFSKANMYRIKLAQFWDGVLSM LDTSQLPYDFHRRAKWVNAAHFYQLLVEPLDIADYHRNNLHRTRGSYITHGRERR

Transcript Sequence

Transcript ID	Os11t0195500-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:11:4785275:4789298:1 gene:Os11g0195500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:phytoalexin deficient 4 description:Hypothetical conserved gene. (Os11t0195500-01)
Sequence	GCGCCCGATTTGGGGGGCGGAAGAAGGAGGAGGAGAAGAAATGGTGGAAACCAAGAAGCT CAAATGCTTCTTCTTCGTCGTCGTCTTGCCAGGTTCGAGACCAGCCACGTCCTCGGCGCG CTGCTCGCCTCCTCGCCGCTGCTGGCGCGGGCGTGGGACCGGTGCGCGGCCGCGGCCGAC GGCGGCGCGTCGTCGCTGGGGTTCGTGCACGGCGGCGGCGGGGGAGGGGAAGGGGAGCCG GTGTGCGTGGCGTTCTCCGGGGTGCAGGCGGCGCTGTCGGCGGCGGCGGGCGGCGGCGGG GGCGCCGAGATCTTCAAGCCGGTCGGGCTCCGCGGGGACGCCGCCGGGCGGCTGTTCGCG CCGCTGGTCGCCGCCGAGCCGGAGGACGCCGGCGGGGAGCCGGTCGCCGTGCAGGCGCTG GCGCTGCAGGGGTTCTTGAGGCTGTGCAGATCCCCTGAATTCCAGGTGCTGCTGAACCAG ATCAGAGGCAAGGCAGTAGTGTTCACTGGCCACTCCCTCGGTGGTGCCATTGCTGCCCTT GTGGCGCTGCACTACCTTTGCACATCATCGTCAAGCTCAGCATTTGCCCCTGCTCCTCCG GTGCTTTGTGTCACATTCGGGAGCCCGCTGCTTGGCAATCAGGCCCTGTCTAGGGCTATC CTGCGTGAGCGGTGGGCCGGCAACTTCTGCCATGTGGTCTCACAGCATGATGTTGTCCCA AGGCTCCTCTTCTGCCCACTCAATGTCATCCCTGTGCACATTGTTGTTGGTATGCAGCTG CACCAGTTGCCGGTGCGCGCGCGCCGTGCAGCCGGTGTGGTGGCCACGGTCACTGCCCGC ATGGCTGACACCAACCAGGAGTCGCTGCGGCAGCTGATCCAAGAGCACGCCGGTGAGGCA GCAATTGAGCAGAAGCTTGCTGCTCCGGAAATACCCAGTGGGAGCCCATACCGGCCTTTT GGGGCGTATGTCCTGTGCTCTCCGGATGGTGCGGCGTGTGTCGACAATCCAACAGCAGCG GTTCAGATGCTATATGCAACATTTGCTGCAAGGCGTGCTCCAGAGACAGGCGCGGTGCCA CCTGAGGCTGCACACTCCTGCTACGGTGACCTCGTGCTGAGCATGCCGCACCACTTGCTG CTCAAGAGGCGCCTTGGTGCCACAGTCACCGCACCTGCCGCGTCCAACTACGACGTCGGC ATCTCCATTGCACTGGAGGCATCAGGTATCACCGGTGAAGCTACAGAGGCAGCACCGGCA CGGCAGTGGCTGAAGACGTCGAAGCGCGTGGGCCGGAGCCCGAGCCTGAACTGTGCGAGC CTCGCAACGCGGTTGGGACGGATCACGCCGTGCCGAGCGCAGATCGAGTGGTACAAGGCA TTGTTCGATGCCAACACCGGGTATTACGACGCATTCAAGCAGCGGCTATCACCTAAGAAG TTCAGCAAGGCCAACATGTACCGCATCAAGCTCGCACAGTTCTGGGATGGCGTCCTCTCC ATGCTTGACACCAGCCAGCTCCCCTACGACTTCCACCGCCGTGCCAAGTGGGTCAACGCT GCCCACTTCTACCAGCTCCTTGTTGAGCCACTTGACATTGCCGACTACCACCGAAACAAC CTACACCGCACACGCGGCTCTTACATCACCCATGGCCGGGAGAGAAGGTAGAAGCAGTAG CACAAAACCACATTGTTCATTCTAGATAATTCATGGACTCCATTAGGCTTATGCACTACC TGTACTCTATAGGTATGAGCTGTTCGACAAGTGGTGGAAACAGAAGGGCTGCACAGATCC CAGCACTGGTGACACCTCTGCCACCACGACAGCGAGGAGGAGCAAGTTCGCTGGGCTAAC GCAGGACCCGTGCTTCTGGGCGAGGGTGGAGGAAGCGCGCGAGCAGACAGAGAGTGCCAA GAGCGAACGCGACATGACATCGCTGGCGAGGATGCTGGAGGACTTGCACAAGTTTGAGCG CCATTCCAGCGAGCTGGTGGAGAACAAGGAGGTCTCCATTGATGTCGTTGCGCCACAGTC GAGCTACTCCCTGTGGGTGAAGGAGTGGAATGAGCTCAAGCTCCGGGAAGAAGTTAGGAC AATATTGTTTCAATTTTGAAGTTGAAACACCTTAAGAAAATTTAATTAATTAATTAATTA GTTAGTTTGTTGAGCATTTGTCATCTAGTTTAGGCACAGATGAATGAATGTTAGCAACAT AATATAGGTGATTGTAAATAGATTTAGTCCTGGTAGAGGCATTGCATTATGATGTATCTG TTCTTCATGTTGAAATTTGCAATAACTTGAAGCTGATTCACTTCACTTCTGTC