Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0194600-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:4723880:4725123:-1 gene:Os11g0194600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectinesterase inhibitor domain containing protein. (Os11t0194600-01)
Sequence

ATGGCGGCCGTCGGGCTGTTGGTACTAGTTGGCCTGCAGGTGGTGGTCGGGTCGATGGCG
GCGCAAGAAGCAGGTGATGCCCCGGCGAGCATCACGGGGCCATGCTCGCGTACAGGAGAC
AAGAAGGCGTGCGTGGAGTTGTTGTCGGGCATCCCGGAGGCCCGGAAGGCGACGACGGTG
GGCCCCCTCGCGGAGCTGTACCTGCAGGCAATCGCCAACCACACGACGGAGGCCAAGGCG
ATGGCTACCAAGCTGCTAGCCACCATGAAGGGGAAGGGCGTGCCACCCGTGTGCCTCCAG
CAGTGCACCGCCAGCGTCGACACCCTCTCCAACGCCCTCGCCGCCTTCTTCTCTGCCTCC
GCCGACGTCAACAAAAAGTACAGGGACTTGGACGGTTTTCTCGTGGGCTTTCTTAAACAA
CCGCCCATCTGCATGAGCGCGTGCCCCATCCGGTCGTGCGATATGGAAGAGGTCACTATC
GCCGACAAGTTCCACCAAGCCTGGAAGATGTTGGGTGTCGCACACGACCTCATCACGCAG
ATCCTAGGCACAAAGTCCTAG

Peptide Sequence

PEP ID

Os11t0194600-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:4723880:4725123:-1 gene:Os11g0194600 transcript:Os11t0194600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectinesterase inhibitor domain containing protein. (Os11t0194600-01)
Sequence

MAAVGLLVLVGLQVVVGSMAAQEAGDAPASITGPCSRTGDKKACVELLSGIPEARKATTV
GPLAELYLQAIANHTTEAKAMATKLLATMKGKGVPPVCLQQCTASVDTLSNALAAFFSAS
ADVNKKYRDLDGFLVGFLKQPPICMSACPIRSCDMEEVTIADKFHQAWKMLGVAHDLITQ
ILGTKS

Transcript Sequence

Transcript ID

Os11t0194600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:4723880:4725123:-1 gene:Os11g0194600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectinesterase inhibitor domain containing protein. (Os11t0194600-01)
Sequence

AGCTAGAGAGAAGCATGCAGCGAGAATTAAGGTAGGAGGAGTAGTTGCTTGCCTCCGTCC
TGATCTCCACTGATTCATTGTGTTATATATGCATAAGCATAACGCAATTAATTAGGAGGC
CGGTCAGCTCGATCATATCGCAGGGAGTACGTAGCAAATTAATGGCGGCCGTCGGGCTGT
TGGTACTAGTTGGCCTGCAGGTGGTGGTCGGGTCGATGGCGGCGCAAGAAGCAGGTGATG
CCCCGGCGAGCATCACGGGGCCATGCTCGCGTACAGGAGACAAGAAGGCGTGCGTGGAGT
TGTTGTCGGGCATCCCGGAGGCCCGGAAGGCGACGACGGTGGGCCCCCTCGCGGAGCTGT
ACCTGCAGGCAATCGCCAACCACACGACGGAGGCCAAGGCGATGGCTACCAAGCTGCTAG
CCACCATGAAGGGGAAGGGCGTGCCACCCGTGTGCCTCCAGCAGTGCACCGCCAGCGTCG
ACACCCTCTCCAACGCCCTCGCCGCCTTCTTCTCTGCCTCCGCCGACGTCAACAAAAAGT
ACAGGGACTTGGACGGTTTTCTCGTGGGCTTTCTTAAACAACCGCCCATCTGCATGAGCG
CGTGCCCCATCCGGTCGTGCGATATGGAAGAGGTCACTATCGCCGACAAGTTCCACCAAG
CCTGGAAGATGTTGGGTGTCGCACACGACCTCATCACGCAGATCCTAGGCACAAAGTCCT
AGATACATTAAGGGGCGGATCCATAACAAGATTTAAGGGGAGGACTCGTGATCTCTTTCT
TCCTTGTTCAGTCCTCTCTACTTTTCATTTTCTCTCTATTTTTCCCCCTTTCATTTCCCC
TTCTACCAATGGTGGTCCAGCGGGATAGGGGGGACTCGAGTCCCCCTAGCACCCACGTTG
GATCCGCCCCTGGATACGTTCTATATGTTGGACATTTTGATTTGCCATCCTACTACCAGA
ATTTACCTATTAAATAAATCTTTCTAGGTTAGCAACCCAAATACTTCCTTACAACTGTTT
TTTTTATTTATTTTGACGGGTGCGCATGTGTCTGTTCCCACCTCCAATCGAGGAATAGGA
ATTTTTATCATACCAGTGTGGGTATTATTGTTATATACTCCTATGTTGTTGAAATAACTG
AGATCGTTATTTTTAAGATGTGCACATTGTAACTATTTCTATGGGGAGAATGATTTCTAT
ATATTGACTTGCACTAATAATATGTAGCGGCTTTTGATTCTCTT