Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0194400-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:4714315:4715470:1 gene:Os11g0194400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pectinesterase family protein. (Os11t0194400-01)
Sequence

ATGGCCGGCTCCTCCTCTCTTGCATCGCCTCACTCACTGCTGCTACCACTCCTCCTTCTT
TTCCTCCTCGTTGCCGCTGCCATAGGCAGCTACGACCCCAAGGCGTTCTGCTCCAAGACG
ACAGACATAGCATCGTGCCTTAGGGTGTTCCCGACACTCCCAGACATCGTCACCAAGGCG
CAGGACAACAAAGAGTTGTACAAACGGCTGGTCCGCTACTGCTCTTTCAAGACCTACGAG
GCCACGTCGCTCGCGGAATCCATGATTGCCACCACCACCGCTGCCGACCCCAAGATCAGC
GCCCCCTTCTTCCCGCAGTGGAAAAGGGACGAGGCGATGACGACAAAAACACCTCCAGGC
AAGTGCCTCCTGAGCTGCAACAAGACCATCGGCGAAGTTGACGCCATCCTAACCTGCGGA
CACACCTACATGGAAGACAGGCCCCCCATCATCCACCAGAACCTCACCGTCTTGTTCCAT
GGCGGCCACCCGCCGTCACTCTGCAAGAGTGGATGCCTTGACGGCTCGTCGTCAGAGGGT
GAGGCCCTCCTCGCCACCAAGTTCAACTATATATGGAGCTTGTTGGATCTCATGAAAGCT
GTCCTACCGGAATATCTTTCTGAGACTGGGACTGCGACGACGACGGTACCATCTCCCTAC
GTCGCTGCTGCGGCGGCCCCGGCGCCATGA

Peptide Sequence

PEP ID

Os11t0194400-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:4714315:4715470:1 gene:Os11g0194400 transcript:Os11t0194400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pectinesterase family protein. (Os11t0194400-01)
Sequence

MAGSSSLASPHSLLLPLLLLFLLVAAAIGSYDPKAFCSKTTDIASCLRVFPTLPDIVTKA
QDNKELYKRLVRYCSFKTYEATSLAESMIATTTAADPKISAPFFPQWKRDEAMTTKTPPG
KCLLSCNKTIGEVDAILTCGHTYMEDRPPIIHQNLTVLFHGGHPPSLCKSGCLDGSSSEG
EALLATKFNYIWSLLDLMKAVLPEYLSETGTATTTVPSPYVAAAAAPAP

Transcript Sequence

Transcript ID

Os11t0194400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:4714315:4715470:1 gene:Os11g0194400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pectinesterase family protein. (Os11t0194400-01)
Sequence

AGTTACCCTCAATTCCCATCCTAGCAAGCATGGCCGGCTCCTCCTCTCTTGCATCGCCTC
ACTCACTGCTGCTACCACTCCTCCTTCTTTTCCTCCTCGTTGCCGCTGCCATAGGCAGCT
ACGACCCCAAGGCGTTCTGCTCCAAGACGACAGACATAGCATCGTGCCTTAGGGTGTTCC
CGACACTCCCAGACATCGTCACCAAGGCGCAGGACAACAAAGAGTTGTACAAACGGCTGG
TCCGCTACTGCTCTTTCAAGACCTACGAGGCCACGTCGCTCGCGGAATCCATGATTGCCA
CCACCACCGCTGCCGACCCCAAGATCAGCGCCCCCTTCTTCCCGCAGTGGAAAAGGGACG
AGGCGATGACGACAAAAACACCTCCAGGCAAGTGCCTCCTGAGCTGCAACAAGACCATCG
GCGAAGTTGACGCCATCCTAACCTGCGGACACACCTACATGGAAGACAGGCCCCCCATCA
TCCACCAGAACCTCACCGTCTTGTTCCATGGCGGCCACCCGCCGTCACTCTGCAAGAGTG
GATGCCTTGACGGCTCGTCGTCAGAGGGTGAGGCCCTCCTCGCCACCAAGTTCAACTATA
TATGGAGCTTGTTGGATCTCATGAAAGCTGTCCTACCGGAATATCTTTCTGAGACTGGGA
CTGCGACGACGACGGTACCATCTCCCTACGTCGCTGCTGCGGCGGCCCCGGCGCCATGAG
CAACTACAAGCATGCAGTCCCTTCGATTCGATCGACCAGACCACAACAGTGCAGTGCTCT
TGGAATCCCTATATACACGCATATACTATGTATCTAAGAAATAATCAAGATTTCACAGAG
AGCATTTAAGAATCATGTTTCACTAATTGTTGCAGTATATAGTAGCCCATTTAATTTCAT
CCATCAGTTAGTGTTCTAATTCTTACAGTGGAATTGGATGTTCACCCCTCAAGTACATAC
ACATACTTGCTTCCCTATCACTCAAATAGTTACAAAATGTTCTGAAAAATAATTAAAGCA
TTTATACAGCAAGCATATATCATAACCAAACTTATGTTTTTTTTTTGGCATGTAAAGATT
GAATTTAGTTTTTTAGGCATAATTGTATTCTTGCCTTTAATTACTTGCTGCAATTGTGAT
TTTTCCTTTGCTTTTT