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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0194000-00
CDS Infomation

cds chromosome:IRGSP-1.0:11:4701769:4702383:-1 gene:Os11g0194000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pectinesterase. (Os11t0194000-00)
Sequence

ATGTCCCTTATTCACCGCTGCCGCATCGACGGGTACCAAGACACACTTTGGGCCCAAAAC
AACCTGCAGGTGTATCTGCGGTGCGACATCGCCGGCACAATTGATTTTGTGTACGGTAAT
GCGAAGGCCATTTTCCAGTATTGCCGCTTACTGGTGCGCAACCCGGGCAACGGCAAGCAC
AACGCAATCACGGCGCAGGGGCGCAACGACCCAACCAGCGAGGAGTCGGGGTTTATATTC
CAAGGTTGCAACATCACCGCCATGGAAGGAGAAAGCCTCGCGGGGGTGGATACCTATCTG
GGGAGGCCCTGGAAGAACCATTCCAGGGTGGTTTTCATGGGCTGTTTCATGAGCGACATC
ATCAACCCTGACGGCTGGGTTCACTGGAACAAGGCAACACCTGTGGAGGAGACGACCAGG
ACAGTGGAGTACCTGGAGTATGGCAACAAAGGCGCTGGGGCAGAGACGGCCGACCGTGTG
AAGTGGAAGGGCGTCCGGGTGATCACCGAGGCGGAGGCCAACCGTTTCACCGTTGATCAC
TTCATCAACGGTAACCAGTGGTTGCCCAACTTGGTCAACGGCGAGCAGATCAACTACACC
CACGGTCTCATCTAG

Peptide Sequence

PEP ID

Os11t0194000-00
PEP Infomation

pep chromosome:IRGSP-1.0:11:4701769:4702383:-1 gene:Os11g0194000 transcript:Os11t0194000-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pectinesterase. (Os11t0194000-00)
Sequence

MSLIHRCRIDGYQDTLWAQNNLQVYLRCDIAGTIDFVYGNAKAIFQYCRLLVRNPGNGKH
NAITAQGRNDPTSEESGFIFQGCNITAMEGESLAGVDTYLGRPWKNHSRVVFMGCFMSDI
INPDGWVHWNKATPVEETTRTVEYLEYGNKGAGAETADRVKWKGVRVITEAEANRFTVDH
FINGNQWLPNLVNGEQINYTHGLI

Transcript Sequence

Transcript ID

Os11t0194000-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:4701769:4702383:-1 gene:Os11g0194000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pectinesterase. (Os11t0194000-00)
Sequence

ATGTCCCTTATTCACCGCTGCCGCATCGACGGGTACCAAGACACACTTTGGGCCCAAAAC
AACCTGCAGGTGTATCTGCGGTGCGACATCGCCGGCACAATTGATTTTGTGTACGGTAAT
GCGAAGGCCATTTTCCAGTATTGCCGCTTACTGGTGCGCAACCCGGGCAACGGCAAGCAC
AACGCAATCACGGCGCAGGGGCGCAACGACCCAACCAGCGAGGAGTCGGGGTTTATATTC
CAAGGTTGCAACATCACCGCCATGGAAGGAGAAAGCCTCGCGGGGGTGGATACCTATCTG
GGGAGGCCCTGGAAGAACCATTCCAGGGTGGTTTTCATGGGCTGTTTCATGAGCGACATC
ATCAACCCTGACGGCTGGGTTCACTGGAACAAGGCAACACCTGTGGAGGAGACGACCAGG
ACAGTGGAGTACCTGGAGTATGGCAACAAAGGCGCTGGGGCAGAGACGGCCGACCGTGTG
AAGTGGAAGGGCGTCCGGGTGATCACCGAGGCGGAGGCCAACCGTTTCACCGTTGATCAC
TTCATCAACGGTAACCAGTGGTTGCCCAACTTGGTCAACGGCGAGCAGATCAACTACACC
CACGGTCTCATCTAG