Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0193800-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:4678922:4679911:1 gene:Os11g0193800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pectinesterase family protein. (Os11t0193800-01)
Sequence

ATGGCCGGCTCCTCCTCTCTTGCATCGCCTCGCTCGCTACAGCTACCACTCCTCCTCCTT
TTCCTCGTTGCCGCTGCCATAGGCAGCTACGACCCCAAGGCGTTCTGCTCCAAGACGACA
GACGTAGCATCGTGCCTTAGGGTGTTCCCGACACTCCCAGACATCGTCACCAAGGCGCAG
GACAACCAAGAGTTGTACAAACGGCTGGTCCGCTACTGCTCATTCAAGACCTACGAGGCC
ACGTCGCTCGCGGAATCCATGATTGCCACCACCACCGCTGCCGACCCCAAGATCAGCGCC
CCCTTCTTCCCGCAGTGGAAAAGGGACGAGGCGATGACGACAAAAACACCTCCAGGCAAG
TGCCTCCTGAGCTGCAACAAGACCATCGGCGAAGTTGACGCCATCCTAACCTGCGGACAC
ACCTACATGGAAGACAGGCCCCCCATCATCCACCAGAACCTCACCGTCTTGTTCCATGGT
GGCCACCCGCCGTCACTCTGCAAGAGTGGATGCCTTGACGGCTCGTCGTCAGAGGGTGAG
GTCCTCCTCGCCACCAAGTTCAACTATATATGGAGCTTGTTGGATCTCATGGAAGCTGTC
CTACCGGAATATCTTTCTGAGACTGGGACTGCGACGACGACGGTACCATCTCCCGACGTC
GCTGCGGCGGCGGCCCCGGGCCCATGA

Peptide Sequence

PEP ID

Os11t0193800-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:4678922:4679911:1 gene:Os11g0193800 transcript:Os11t0193800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pectinesterase family protein. (Os11t0193800-01)
Sequence

MAGSSSLASPRSLQLPLLLLFLVAAAIGSYDPKAFCSKTTDVASCLRVFPTLPDIVTKAQ
DNQELYKRLVRYCSFKTYEATSLAESMIATTTAADPKISAPFFPQWKRDEAMTTKTPPGK
CLLSCNKTIGEVDAILTCGHTYMEDRPPIIHQNLTVLFHGGHPPSLCKSGCLDGSSSEGE
VLLATKFNYIWSLLDLMEAVLPEYLSETGTATTTVPSPDVAAAAAPGP

Transcript Sequence

Transcript ID

Os11t0193800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:4678922:4679911:1 gene:Os11g0193800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pectinesterase family protein. (Os11t0193800-01)
Sequence

GTTACCCTCAATTCCTATCCTAGCAAGCATGGCCGGCTCCTCCTCTCTTGCATCGCCTCG
CTCGCTACAGCTACCACTCCTCCTCCTTTTCCTCGTTGCCGCTGCCATAGGCAGCTACGA
CCCCAAGGCGTTCTGCTCCAAGACGACAGACGTAGCATCGTGCCTTAGGGTGTTCCCGAC
ACTCCCAGACATCGTCACCAAGGCGCAGGACAACCAAGAGTTGTACAAACGGCTGGTCCG
CTACTGCTCATTCAAGACCTACGAGGCCACGTCGCTCGCGGAATCCATGATTGCCACCAC
CACCGCTGCCGACCCCAAGATCAGCGCCCCCTTCTTCCCGCAGTGGAAAAGGGACGAGGC
GATGACGACAAAAACACCTCCAGGCAAGTGCCTCCTGAGCTGCAACAAGACCATCGGCGA
AGTTGACGCCATCCTAACCTGCGGACACACCTACATGGAAGACAGGCCCCCCATCATCCA
CCAGAACCTCACCGTCTTGTTCCATGGTGGCCACCCGCCGTCACTCTGCAAGAGTGGATG
CCTTGACGGCTCGTCGTCAGAGGGTGAGGTCCTCCTCGCCACCAAGTTCAACTATATATG
GAGCTTGTTGGATCTCATGGAAGCTGTCCTACCGGAATATCTTTCTGAGACTGGGACTGC
GACGACGACGGTACCATCTCCCGACGTCGCTGCGGCGGCGGCCCCGGGCCCATGAGCAAC
TACATATGCATGCAGTCCCTTCGATTCGATCGACCACACCACAACAGTGCAGTGCATACA
CGCATATACTTACTATGTATCTAAGAAATAATTAAGATTTCACAGAGAGCATTTAAGAAT
CAAGTTTCACTAATTGTTGCAGTATATAGTAGCCCATTTAATTTCATCCATCAGTTAGAG
TCTCACCATGTTACGGTCCGTTTTGTGCCTTTTATTCTCTCCAAAATATAGTGTTCTAAT
TCTTACAGTGGAATTGGATGTTCACCCCTC