Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0181800-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:4097620:4101455:1 gene:Os11g0181800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Short-chain dehydrogenase Tic32. (Os11t0181800-01)
Sequence

ATGGGGTTTAGCTGGGGATGGCTGTGTGGACGGCGCAATGGGCCATCGGGCTTCGGCGGG
GCATCCACTGCCGACGAGGTCACCGCCGGCGTCGACGCCAGCCGCCTGACGGTCGTCGTC
ACAGGTGCAACAAATGGCATAGGAAAGGAGACAGCTAGGGTCCTTGCACTAAGGGGAGCA
GAGGTGATCTTACCAGCAAGGACACTGGAGAGTGGCATGAAGGTGAAACAGAGCCTTGCA
GAGGAAATCCCCAGCTCAAAGCTCCATGTCATGGAGATGGATCTTAGCTCCCTCGACTCC
GTTCGCAGCTTCGCAAAATCGTTCAACTCGTCTTATAGGCATCTGAACGTCCTCATAAAT
AATGCAGGGGTAATGTCCTGCCCTTTTGGACTATCCAAAGATGGGATTGAGCTTCAATTT
GCAACGAATCATGTTGGGCATTTCTTGCTGACAAATCTCCTTCTCGACAAGATGAAAGCC
ACGGCTAAAGAGACTGGTTTGCAGGGCAGGATCATAAACGTGTCTTCTATTTCGCATCGA
GGAAGCGATGGTTCATGCTTTGATCTAGATAAGCTGAACGACAAGTCGAAGTACCGTCCG
TTCAAGGCATATGGACATTCCAAATTAGCGAATATTCTCCATGCAAATGAACTATCCAGG
CGTTTTCAGGAAGAAGGATGCAATCTGACTGCAAATTCCCTGCATCCTGGAGTAATCGCC
ACCAACCTCCCTCGCCACATCCTGACAAACAGTCTGATTATATCAATCTTCTCAGTCATG
AAACCTTTTCTGAAGAGCATACCTCAGGGAGCTGCGACGAACTGTTATCTAGCATTGCAT
CCTGGATTGAAGGACGTGTCCGGCAAATACTTTGCCGACTGCAACGAAGCTACGCCGACG
GCTGTTGCAAGAGATGCAGAGCTAGCAAAGAAGCTGTGGGAGTTCAGTGAAGAACTTACC
AGTGGAGATCAGAAGCTGAAGGAGAAGTGA

Peptide Sequence

PEP ID

Os11t0181800-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:4097620:4101455:1 gene:Os11g0181800 transcript:Os11t0181800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Short-chain dehydrogenase Tic32. (Os11t0181800-01)
Sequence

MGFSWGWLCGRRNGPSGFGGASTADEVTAGVDASRLTVVVTGATNGIGKETARVLALRGA
EVILPARTLESGMKVKQSLAEEIPSSKLHVMEMDLSSLDSVRSFAKSFNSSYRHLNVLIN
NAGVMSCPFGLSKDGIELQFATNHVGHFLLTNLLLDKMKATAKETGLQGRIINVSSISHR
GSDGSCFDLDKLNDKSKYRPFKAYGHSKLANILHANELSRRFQEEGCNLTANSLHPGVIA
TNLPRHILTNSLIISIFSVMKPFLKSIPQGAATNCYLALHPGLKDVSGKYFADCNEATPT
AVARDAELAKKLWEFSEELTSGDQKLKEK

Transcript Sequence

Transcript ID

Os11t0181800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:4097620:4101455:1 gene:Os11g0181800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Short-chain dehydrogenase Tic32. (Os11t0181800-01)
Sequence

CTCTGAAACTTCGGCTGCTGACCAGTTTGTAGTTCAGGAGAACAAGGAGGAGGAGGAATG
GGGTTTAGCTGGGGATGGCTGTGTGGACGGCGCAATGGGCCATCGGGCTTCGGCGGGGCA
TCCACTGCCGACGAGGTCACCGCCGGCGTCGACGCCAGCCGCCTGACGGTCGTCGTCACA
GGTGCAACAAATGGCATAGGAAAGGAGACAGCTAGGGTCCTTGCACTAAGGGGAGCAGAG
GTGATCTTACCAGCAAGGACACTGGAGAGTGGCATGAAGGTGAAACAGAGCCTTGCAGAG
GAAATCCCCAGCTCAAAGCTCCATGTCATGGAGATGGATCTTAGCTCCCTCGACTCCGTT
CGCAGCTTCGCAAAATCGTTCAACTCGTCTTATAGGCATCTGAACGTCCTCATAAATAAT
GCAGGGGTAATGTCCTGCCCTTTTGGACTATCCAAAGATGGGATTGAGCTTCAATTTGCA
ACGAATCATGTTGGGCATTTCTTGCTGACAAATCTCCTTCTCGACAAGATGAAAGCCACG
GCTAAAGAGACTGGTTTGCAGGGCAGGATCATAAACGTGTCTTCTATTTCGCATCGAGGA
AGCGATGGTTCATGCTTTGATCTAGATAAGCTGAACGACAAGTCGAAGTACCGTCCGTTC
AAGGCATATGGACATTCCAAATTAGCGAATATTCTCCATGCAAATGAACTATCCAGGCGT
TTTCAGGAAGAAGGATGCAATCTGACTGCAAATTCCCTGCATCCTGGAGTAATCGCCACC
AACCTCCCTCGCCACATCCTGACAAACAGTCTGATTATATCAATCTTCTCAGTCATGAAA
CCTTTTCTGAAGAGCATACCTCAGGGAGCTGCGACGAACTGTTATCTAGCATTGCATCCT
GGATTGAAGGACGTGTCCGGCAAATACTTTGCCGACTGCAACGAAGCTACGCCGACGGCT
GTTGCAAGAGATGCAGAGCTAGCAAAGAAGCTGTGGGAGTTCAGTGAAGAACTTACCAGT
GGAGATCAGAAGCTGAAGGAGAAGTGAAGGTAGCGACCTGAACCTGAAGTCGGCGGCGAC
ATTGGAAGGAGCGCAGTGCGCAGAGTTTGGTGGACTGGAGCTGGAGGGATGCGACGCAAT
GGAAGTACGAAACCATGAAAGCAATGGCATCGGTTTTAGGCTAGACTGAATATGTCACTG
AAAATTTTGCTTGTCCTAAGTATACTATTAGTATATGTCTTGTTCTAAACTTGTTCGGTT
GTTCCTTTAGGCAAGACTGAATATGTCTTGTTCTAAACTATTAGCTATGTGAGTGTGACT
ATGTCATCCGATGACGATTGTACCCCTACATTCAGGGGCGAATCCACAGGGTATAACACT
GTTCTAAACTTTATAATCCCATTGGTGT