Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0181700-02
CDS Infomation

cds chromosome:IRGSP-1.0:11:4094598:4097141:1 gene:Os11g0181700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to retinol dehydrogenase 12. (Os11t0181700-01);Similar to Short-chain dehydrogenase Tic32. (Os11t0181700-02)
Sequence

ATGGGGCTCTGGGAGTGGCCGTGGGATCGCCGGCGGCGAGGCCCGTCGGGCTTAGGCCCC
ACCTCCACCGCCGAAGAGGTCACCGCCGGCGTAGACGCCACCCACCTCACCGCCATCGTC
ACAGGAGCGACGAACGGGATCGGGAGGGAGACGGCCCGAGTTCTGGCGAGGAGGGGGGCG
GAGGTGATCATCCCGGCGAGGACGATGGAGAGCGGCAACGCGGTGAAGCAGAGCATCGCG
GAGGAGGTCCCGGGGTCCAGGCTCCACGTCATGGAGATGGATCTCGCCTCGCTCGACTCC
GTCCGCCGCTTCGCCACCGCGTTCGACTCCTCCCACACCCACCTCAACATCCTCATAAAC
AATGCAGGGATAATGGGGTGCCCTTTCAAGCTATCCAAGGATGGGATTGAGCTGCAGTTC
GCAACGAATCATGTCGGTCATTTCTTGCTTACAAATCTTCTGCTCGACAAGATGAAATCG
ACGGCTAGGAAGACCGGCGTGCAGGGCAGGATCGTGAACGTATCGTCTATTGCGCACAAG
AGAAGTGATGGTTCTTGCTTTGATCTGAACAAGCTAAACGATAAGTCTAGGTACAAACCA
CTCATTGCATATGCACATTCCAAATTAGCTAATATTCTTCATGCAAATGAGCTAGCAAAG
CGTTTTCAGGAAGAAGGATGTAATTTGACTGCAAATTCCCTGCATCCTGGAGTGATCCTC
ACCAATATCACTCGTTATGTCGTCACAAACAGCGTGATGGTTTCAATCCTTTCTGTGGGA
AACCTCTTTCTGAAGAACACACAACAGGGAGCTGCAACCACATGCTATCTGGCACTGCAT
CCTGAACTGAAGGATGTCTCCGGCAAATACTTCGCGGACTGCAAGGAAGCCACGCCGAGG
CCTGCTGCGAGAGACGCAGAGCTAGCGAAGAGGCTATGGGATTTCAGCGAACAGCTCGTG
GATACTAATCGTCGTGGAGAATTCAACAGACAAAAATGA

Peptide Sequence

PEP ID

Os11t0181700-02
PEP Infomation

pep chromosome:IRGSP-1.0:11:4094598:4097141:1 gene:Os11g0181700 transcript:Os11t0181700-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to retinol dehydrogenase 12. (Os11t0181700-01);Similar to Short-chain dehydrogenase Tic32. (Os11t0181700-02)
Sequence

MGLWEWPWDRRRRGPSGLGPTSTAEEVTAGVDATHLTAIVTGATNGIGRETARVLARRGA
EVIIPARTMESGNAVKQSIAEEVPGSRLHVMEMDLASLDSVRRFATAFDSSHTHLNILIN
NAGIMGCPFKLSKDGIELQFATNHVGHFLLTNLLLDKMKSTARKTGVQGRIVNVSSIAHK
RSDGSCFDLNKLNDKSRYKPLIAYAHSKLANILHANELAKRFQEEGCNLTANSLHPGVIL
TNITRYVVTNSVMVSILSVGNLFLKNTQQGAATTCYLALHPELKDVSGKYFADCKEATPR
PAARDAELAKRLWDFSEQLVDTNRRGEFNRQK

Transcript Sequence

Transcript ID

Os11t0181700-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:4094598:4097141:1 gene:Os11g0181700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to retinol dehydrogenase 12. (Os11t0181700-01);Similar to Short-chain dehydrogenase Tic32. (Os11t0181700-02)
Sequence

GTGCAACACGGCTTGCGAGCGGCGGCGCGGATGGGGCTCTGGGAGTGGCCGTGGGATCGC
CGGCGGCGAGGCCCGTCGGGCTTAGGCCCCACCTCCACCGCCGAAGAGGTCACCGCCGGC
GTAGACGCCACCCACCTCACCGCCATCGTCACAGGAGCGACGAACGGGATCGGGAGGGAG
ACGGCCCGAGTTCTGGCGAGGAGGGGGGCGGAGGTGATCATCCCGGCGAGGACGATGGAG
AGCGGCAACGCGGTGAAGCAGAGCATCGCGGAGGAGGTCCCGGGGTCCAGGCTCCACGTC
ATGGAGATGGATCTCGCCTCGCTCGACTCCGTCCGCCGCTTCGCCACCGCGTTCGACTCC
TCCCACACCCACCTCAACATCCTCATAAACAATGCAGGGATAATGGGGTGCCCTTTCAAG
CTATCCAAGGATGGGATTGAGCTGCAGTTCGCAACGAATCATGTCGGTCATTTCTTGCTT
ACAAATCTTCTGCTCGACAAGATGAAATCGACGGCTAGGAAGACCGGCGTGCAGGGCAGG
ATCGTGAACGTATCGTCTATTGCGCACAAGAGAAGTGATGGTTCTTGCTTTGATCTGAAC
AAGCTAAACGATAAGTCTAGGTACAAACCACTCATTGCATATGCACATTCCAAATTAGCT
AATATTCTTCATGCAAATGAGCTAGCAAAGCGTTTTCAGGAAGAAGGATGTAATTTGACT
GCAAATTCCCTGCATCCTGGAGTGATCCTCACCAATATCACTCGTTATGTCGTCACAAAC
AGCGTGATGGTTTCAATCCTTTCTGTGGGAAACCTCTTTCTGAAGAACACACAACAGGGA
GCTGCAACCACATGCTATCTGGCACTGCATCCTGAACTGAAGGATGTCTCCGGCAAATAC
TTCGCGGACTGCAAGGAAGCCACGCCGAGGCCTGCTGCGAGAGACGCAGAGCTAGCGAAG
AGGCTATGGGATTTCAGCGAACAGCTCGTGGATACTAATCGTCGTGGAGAATTCAACAGA
CAAAAATGACACTGTTTAGACTGTCTGAAATTCTGAACCTGACCATGTCTCAACCTGAGA
TCCTTCAGATACAGAATTTTATTTTTTATTTCTATTTTTTATTTTTTTTCAATGGAATGA
TACAGCTTATATAATATGACCATAGAGCTGTTTGTCAGTACTGTTGTTTGCATGTGTAAA
CAAATTCAAATGCATTAATAATCAGCCTGCTTTTTTTGCC