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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0179500-00
CDS Infomation

cds chromosome:IRGSP-1.0:11:3952883:3953458:1 gene:Os11g0179500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to dirigent-like protein pDIR9. (Os11t0179500-00)
Sequence

ATGGCAAGAGGATTGGCGGTGATGAGTGTACTCTTATTTGTGTTGGCCACTACTACTAAG
GCTGACATGGAAGGCAGGTCTAGGCCCAACGCCTTAGGCAACAGTTTAGTGCCGACACAC
CTACACTTCTACTTCCATGACAAGGTGACCAGTCCGTCACCGTCAGCGGTGAGGGTAGTA
AACCCGCCAAACAACACATCGTTGACCTTCTTGGGGATGGTGGTTGTCATGGATGACCCA
TTGACCGAACGGCCCGATCCCGCATCAAAGCTCGTGGGCCATGCCCAGGGCATGTATGTC
TCGTCTGACCAAGCCCGGATAGGCTTCTTGCAGGCCATGAATATCGTGCTCACCGCTGGG
TCGTATAATGGAAGCGTGGTCATAGTGCTTGGCAGCAACCACATATCCGACATTATCCAT
GAGATGCCGATTTTGGGCGGAACCGGCCACTTTCGCTTCGCTCGTGGCTATGCCCAAGCC
CGCACCTACTTTCTCGACCCAAACGGACTTGATGCCATTGTCGAGTACAACGTTTATGTC
TTCCATTGA

Peptide Sequence

PEP ID

Os11t0179500-00
PEP Infomation

pep chromosome:IRGSP-1.0:11:3952883:3953458:1 gene:Os11g0179500 transcript:Os11t0179500-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to dirigent-like protein pDIR9. (Os11t0179500-00)
Sequence

MARGLAVMSVLLFVLATTTKADMEGRSRPNALGNSLVPTHLHFYFHDKVTSPSPSAVRVV
NPPNNTSLTFLGMVVVMDDPLTERPDPASKLVGHAQGMYVSSDQARIGFLQAMNIVLTAG
SYNGSVVIVLGSNHISDIIHEMPILGGTGHFRFARGYAQARTYFLDPNGLDAIVEYNVYV
FH

Transcript Sequence

Transcript ID

Os11t0179500-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:3952883:3953458:1 gene:Os11g0179500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to dirigent-like protein pDIR9. (Os11t0179500-00)
Sequence

TAACACAAATTCAATTCTAAGATCAAAATGGCAAGAGGATTGGCGGTGATGAGTGTACTC
TTATTTGTGTTGGCCACTACTACTAAGGCTGACATGGAAGGCAGGTCTAGGCCCAACGCC
TTAGGCAACAGTTTAGTGCCGACACACCTACACTTCTACTTCCATGACAAGGTGACCAGT
CCGTCACCGTCAGCGGTGAGGGTAGTAAACCCGCCAAACAACACATCGTTGACCTTCTTG
GGGATGGTGGTTGTCATGGATGACCCATTGACCGAACGGCCCGATCCCGCATCAAAGCTC
GTGGGCCATGCCCAGGGCATGTATGTCTCGTCTGACCAAGCCCGGATAGGCTTCTTGCAG
GCCATGAATATCGTGCTCACCGCTGGGTCGTATAATGGAAGCGTGGTCATAGTGCTTGGC
AGCAACCACATATCCGACATTATCCATGAGATGCCGATTTTGGGCGGAACCGGCCACTTT
CGCTTCGCTCGTGGCTATGCCCAAGCCCGCACCTACTTTCTCGACCCAAACGGACTTGAT
GCCATTGTCGAGTACAACGTTTATGTCTTCCATTGA