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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0179400-00
CDS Infomation

cds chromosome:IRGSP-1.0:11:3934039:3934606:-1 gene:Os11g0179400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Dirigent-like protein. (Os11t0179400-00)
Sequence

ATGGCAGCCTCGTCGTCCTTCGTGCTCGCGGCGGCGGCGCTACTCCTCCAGGCCGTGACG
GCGGCGGCGGAGGCGGCGGGGCAGCAGAAGGAGATGCGGATGCGTGTGTACTGGCACGAT
GTGGTGACCGGGCCGAACTCGACGGTGGCGAAGGTGGCGGAGGCGCCGACGTCGAGGGCC
TCCGCGACGGTGTTCGGCACTGTGTACGTCATCGACGACCCGCTCACCGACGGGCCCAGC
CTGACGGCGCCGTCGAGGCTGGTCGGCCATGCGCAGGGGATGTACGTGAGCGCCGGGAAG
GAGACGATGTCGCTGCTGATGGCGATGAGCTTCGTGTTCGCCGCCGATGAGCCGTACAAC
GGCAGCAGCGTTGCCATCTTCGGGCCCAACCCGGCGAGGCCGGTGAGTGAGATCCCCGTG
GTCGGCGGCACCGGCGCGTTCCGCTTCGCCCGCGGCTACTGCCGCGCCACCACGTACTGG
TACAACGCCGCCGGCGACGCCACCGTCCCGTACGATATCCATATCCGCCACGATTAA

Peptide Sequence

PEP ID

Os11t0179400-00
PEP Infomation

pep chromosome:IRGSP-1.0:11:3934039:3934606:-1 gene:Os11g0179400 transcript:Os11t0179400-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Dirigent-like protein. (Os11t0179400-00)
Sequence

MAASSSFVLAAAALLLQAVTAAAEAAGQQKEMRMRVYWHDVVTGPNSTVAKVAEAPTSRA
SATVFGTVYVIDDPLTDGPSLTAPSRLVGHAQGMYVSAGKETMSLLMAMSFVFAADEPYN
GSSVAIFGPNPARPVSEIPVVGGTGAFRFARGYCRATTYWYNAAGDATVPYDIHIRHD

Transcript Sequence

Transcript ID

Os11t0179400-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:3934039:3934606:-1 gene:Os11g0179400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Dirigent-like protein. (Os11t0179400-00)
Sequence

CTAGCTAATTAAGCAATGGCAGCCTCGTCGTCCTTCGTGCTCGCGGCGGCGGCGCTACTC
CTCCAGGCCGTGACGGCGGCGGCGGAGGCGGCGGGGCAGCAGAAGGAGATGCGGATGCGT
GTGTACTGGCACGATGTGGTGACCGGGCCGAACTCGACGGTGGCGAAGGTGGCGGAGGCG
CCGACGTCGAGGGCCTCCGCGACGGTGTTCGGCACTGTGTACGTCATCGACGACCCGCTC
ACCGACGGGCCCAGCCTGACGGCGCCGTCGAGGCTGGTCGGCCATGCGCAGGGGATGTAC
GTGAGCGCCGGGAAGGAGACGATGTCGCTGCTGATGGCGATGAGCTTCGTGTTCGCCGCC
GATGAGCCGTACAACGGCAGCAGCGTTGCCATCTTCGGGCCCAACCCGGCGAGGCCGGTG
AGTGAGATCCCCGTGGTCGGCGGCACCGGCGCGTTCCGCTTCGCCCGCGGCTACTGCCGC
GCCACCACGTACTGGTACAACGCCGCCGGCGACGCCACCGTCCCGTACGATATCCATATC
CGCCACGATTAACTGATTCATTATTATT