Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0176200-02
CDS Infomation

cds chromosome:IRGSP-1.0:11:3802973:3807166:-1 gene:Os11g0176200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DOB1/SK12/helY-like DEAD-box Helicase description:Similar to HUA enhancer 2. (Os11t0176200-01);Similar to predicted protein. (Os11t0176200-02)
Sequence

ATGATTATGGAACGGAAGTTTCAACCGGTCATAATTTTCAGCTTTAGCAGAAGAGAATGT
GAACACCATGCCATGTCAATGTCAAAACTTGACTTCAACACTGATGAAGAAAAAGATAAC
ATCGAACAGGTTTTCAGCAGTGCTATTCTATGTTTAAGTGAGGAAGATAGAGGTTTGCCT
GCTATAGAGTTGATGTTGCCTCTTCTTAAACGAGGTATTGCAGTTCACCATTCTGGATTG
CTTCCATTAATTAAAGAGCTGGTGGAGTTGCTCTTCCAAGAAGGCCTTGTAAAAGCTCTC
TTTGCTACTGAAACATTTGCCATGGGACTGAATATGCCTGCAAAAACCGTTGTGTTCACG
TCTGTCAAAAAATGGGATGGTGATACTAACCGCTATATTGCTTCTGGAGAATATATACAG
ATGAGTGGAAGAGCTGGTCGGCGTGGCAAGGATATACGTGGAATTTGTGTTATAATGATA
GATGAAAAAATGGAGATGAGTGTTATAAAGGACATGGTGTTAGGTAAACCAGCACCTCTT
GTCAGTACTTTCCGGCTGAGCTATTACACAATTCTCAATTTAATGAGTCGCGTGGAGGGC
CAGTTTACTGCTGAGCATGTGATCAGGAATTCATTCCATCAGTTTCAATATGAGAAGGCA
TTGCCAGAAGTGGTGCAAAAGATTACATCATTGGAAAATGAAGCTACCTTACTTGATTCT
TCTGGAGAGACTGATCTTGCAGAATATCATAAATTGGGGCTTGATATATCGGAACTTGAA
AAGAAAATCATGTCGGAGATGATTAGACCAGAGAGGGCTTTGTTATACTTGGTTCCTGGA
AGGCTGGTTAAAGTGAGAGATGGTTCAACAGACTGGGGATGGGGTGTGGTTGTAAATGTG
GTTAAGAAACCTCCACAATCTGGTACTCTCCCTCCTGCACTAAGTGCATCTCGTGGTAAT
AACTATATAGTGGATACCCTGCTTCACTGTTCTTCTAGTTCGAACGAGAATGGATCCCGT
TCAAAGCCATTGCCACCACGCCCAGGGGAGAAGGGAGAAATGCATGTGGTGCCTGTACCA
CTACCTTTATTATCTGGTCTAAGCAGTGTTAGAATCAACATTCCTCCTGATCTACGACCA
CCTGAAGCAAGACAAAATATACTTTTTGCAGTGCAAGAGCTGGGAAAGCGGTACCCCCAA
GGTCTTCCAAAGCTAGATCCAATCAAAGACATGGGTCTTCAAGAACCTGAACTAGTGGAG
TTGGTTCATAAGCTTGATGATCTTGAGCAGAAACTGTGTTCTCATCCACTTCATAAGTCT
GATCAAAGTGAGCAGCAACTGTCATGGTATCAAAGAAAAGCTGAGCTAAATCATGAAATT
CAAATGCTAAAGTCAAAGATGCGGGATTCGCAGCTACAAAAATTTAGAGATGAGCTTAGG
AATCGGTCCCGTGTTCTGAAGATGCTTGGTCACATTGATGCTGATGGTGTGCTCCAGCTG
AAAGGACGTGCTGCCTGTTTAATAGACACAGGGGATGAGCTGCTTATCACTGAACTTATG
TTTAATGGTACATTTAACGATCTTGATCATCATCAAGTTGCTTCCCTTGCTAGCTGCTTT
ATACCTTGTGAGAAGTCTAGTGAACAAATACGCCTGAGAAGTGAGCTTTCTACACCAATG
ATGCAGCTACAGGAGGCTGCGAGAAAAATAGCTGAGGT

Peptide Sequence

PEP ID

Os11t0176200-02
PEP Infomation

pep chromosome:IRGSP-1.0:11:3802973:3807166:-1 gene:Os11g0176200 transcript:Os11t0176200-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DOB1/SK12/helY-like DEAD-box Helicase description:Similar to HUA enhancer 2. (Os11t0176200-01);Similar to predicted protein. (Os11t0176200-02)
Sequence

MIMERKFQPVIIFSFSRRECEHHAMSMSKLDFNTDEEKDNIEQVFSSAILCLSEEDRGLP
AIELMLPLLKRGIAVHHSGLLPLIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFT
SVKKWDGDTNRYIASGEYIQMSGRAGRRGKDIRGICVIMIDEKMEMSVIKDMVLGKPAPL
VSTFRLSYYTILNLMSRVEGQFTAEHVIRNSFHQFQYEKALPEVVQKITSLENEATLLDS
SGETDLAEYHKLGLDISELEKKIMSEMIRPERALLYLVPGRLVKVRDGSTDWGWGVVVNV
VKKPPQSGTLPPALSASRGNNYIVDTLLHCSSSSNENGSRSKPLPPRPGEKGEMHVVPVP
LPLLSGLSSVRINIPPDLRPPEARQNILFAVQELGKRYPQGLPKLDPIKDMGLQEPELVE
LVHKLDDLEQKLCSHPLHKSDQSEQQLSWYQRKAELNHEIQMLKSKMRDSQLQKFRDELR
NRSRVLKMLGHIDADGVLQLKGRAACLIDTGDELLITELMFNGTFNDLDHHQVASLASCF
IPCEKSSEQIRLRSELSTPMMQLQEAARKIAE

Transcript Sequence

Transcript ID

Os11t0176200-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:3802973:3807166:-1 gene:Os11g0176200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DOB1/SK12/helY-like DEAD-box Helicase description:Similar to HUA enhancer 2. (Os11t0176200-01);Similar to predicted protein. (Os11t0176200-02)
Sequence

AGATGATTATGGAACGGAAGTTTCAACCGGTCATAATTTTCAGCTTTAGCAGAAGAGAAT
GTGAACACCATGCCATGTCAATGTCAAAACTTGACTTCAACACTGATGAAGAAAAAGATA
ACATCGAACAGGTTTTCAGCAGTGCTATTCTATGTTTAAGTGAGGAAGATAGAGGTTTGC
CTGCTATAGAGTTGATGTTGCCTCTTCTTAAACGAGGTATTGCAGTTCACCATTCTGGAT
TGCTTCCATTAATTAAAGAGCTGGTGGAGTTGCTCTTCCAAGAAGGCCTTGTAAAAGCTC
TCTTTGCTACTGAAACATTTGCCATGGGACTGAATATGCCTGCAAAAACCGTTGTGTTCA
CGTCTGTCAAAAAATGGGATGGTGATACTAACCGCTATATTGCTTCTGGAGAATATATAC
AGATGAGTGGAAGAGCTGGTCGGCGTGGCAAGGATATACGTGGAATTTGTGTTATAATGA
TAGATGAAAAAATGGAGATGAGTGTTATAAAGGACATGGTGTTAGGTAAACCAGCACCTC
TTGTCAGTACTTTCCGGCTGAGCTATTACACAATTCTCAATTTAATGAGTCGCGTGGAGG
GCCAGTTTACTGCTGAGCATGTGATCAGGAATTCATTCCATCAGTTTCAATATGAGAAGG
CATTGCCAGAAGTGGTGCAAAAGATTACATCATTGGAAAATGAAGCTACCTTACTTGATT
CTTCTGGAGAGACTGATCTTGCAGAATATCATAAATTGGGGCTTGATATATCGGAACTTG
AAAAGAAAATCATGTCGGAGATGATTAGACCAGAGAGGGCTTTGTTATACTTGGTTCCTG
GAAGGCTGGTTAAAGTGAGAGATGGTTCAACAGACTGGGGATGGGGTGTGGTTGTAAATG
TGGTTAAGAAACCTCCACAATCTGGTACTCTCCCTCCTGCACTAAGTGCATCTCGTGGTA
ATAACTATATAGTGGATACCCTGCTTCACTGTTCTTCTAGTTCGAACGAGAATGGATCCC
GTTCAAAGCCATTGCCACCACGCCCAGGGGAGAAGGGAGAAATGCATGTGGTGCCTGTAC
CACTACCTTTATTATCTGGTCTAAGCAGTGTTAGAATCAACATTCCTCCTGATCTACGAC
CACCTGAAGCAAGACAAAATATACTTTTTGCAGTGCAAGAGCTGGGAAAGCGGTACCCCC
AAGGTCTTCCAAAGCTAGATCCAATCAAAGACATGGGTCTTCAAGAACCTGAACTAGTGG
AGTTGGTTCATAAGCTTGATGATCTTGAGCAGAAACTGTGTTCTCATCCACTTCATAAGT
CTGATCAAAGTGAGCAGCAACTGTCATGGTATCAAAGAAAAGCTGAGCTAAATCATGAAA
TTCAAATGCTAAAGTCAAAGATGCGGGATTCGCAGCTACAAAAATTTAGAGATGAGCTTA
GGAATCGGTCCCGTGTTCTGAAGATGCTTGGTCACATTGATGCTGATGGTGTGCTCCAGC
TGAAAGGACGTGCTGCCTGTTTAATAGACACAGGGGATGAGCTGCTTATCACTGAACTTA
TGTTTAATGGTACATTTAACGATCTTGATCATCATCAAGTTGCTTCCCTTGCTAGCTGCT
TTATACCTTGTGAGAAGTCTAGTGAACAAATACGCCTGAGAAGTGAGCTTTCTACACCAA
TGATGCAGCTACAGGAGGCTGCGAGAAAAATAGCTGAGGT