Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0176100-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:3795981:3801061:1 gene:Os11g0176100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nucleotide-binding, alpha-beta plait domain containing protein. (Os11t0176100-01)
Sequence

ATGGCCGCCGCGGCCCCCGCCGGCGCCCAGAACCGCTGCGTCTTCGTCGGGAACATTCCT
TACGATGCGACGGAGGAGCAGCTCGTGCAGATTTGCGAGGAAGTCGGCCCTGTGGTCTCA
TTCAGATTGGTTATTGATAAAGAAACAGGGAAGCCAAAGGGTTATGGGTTTTGTGAGTAC
AAGGATGAGGAGACTGCTCTAAGTGCACGCCGGAACCTTCAAGGTTATGAAATTAATGGC
CGTCAGTTACGTGTTGATTTTGCTGAAAATGGGAGGAATGCTGACAGAAACAGAGAAAAG
GGTCGTGGAGGACCTGGAATGGCATCCAGTGTTGATACTCAGAAACAATTAGCTGGGACT
CCGGTTGTAGGCGATACAGGTCTTCATCAGCCAGTTGGTCTTCCATCGGCTATTCATGCT
GCATCTGTGATGGCTGGTATTCTTGGAGGATCTCAAACTGCAAATGTTCAAAATGGTTTA
CCTGTCCAGTATGGGCTTGGAAATGACCCTCTTACTCATTATTTGGCCAGAATGTCAAAG
CACCAGTTGTATGAAATCATGTCTGAGTTGAAGTCCCTAACTAGTCAAAATAAGGATGTT
GCCAACAAACTGCTGCAAGGAATTCCACAGCTGTCAAAGGCCCTATTTCAGTCACAAATA
ATGCTTGGAATGGTGACGCCCCAGATGATGCAGATGGCAAAGAGCCAACAGCCCTCTAGC
TCCTTGGCACAATCATCATCTCACATAAGCGAACCATTTCCACAGCCAGATGCTATGATA
TCAAGTGTTCCAAGACCTTCTGCAAGCTTGCCAAACCCAAATGTCCTGCAGGACCCTTCT
GCACAGCTGCATAATTTTCCTCAGTATCCGCATTCATCTCAGCCTGCGGGCACAATATTT
CCACATGGAAGTCAGTCTGGGGTGGGCATACATCCTCCAATTGTATCTCAACTCCTTGGT
GCCTCTTCCAGTGTTCCTCCTCTACCCCTTGCTACCTCAGGAAGCCTGATATCGCAGGTT
CAGCCCCCATTTATGCCACATCACCCTAGGCCACCAGCTATGCCAGCGGGTATGCAACAA
CTACCATTGACTCATCCACATGTTCCCCAGGTACCTGCTATACCTGATATAGCACAGAAG
GAAATGAGGTTTCCTGAGCAAGCAAATCGTTCGACGGAGTTTGCTCATCATCCAAAGTTG
CGAAAATTGGAGGATGGAACATCCACACCTGGAATTGTAAACAACAATCCAGCTGTTTAT
CCTGCTCCATCCCAAGGAATGCTCCCTGGTGGACCATCAGGGAGCTATAATTCTGCTGCT
GTTAGCTTCCAGCAGCCAGAGAACGAAGTGCCTCAGCTCACACCCGATGTTGAGTCGGCT
CTTCTGCAGCAAGTCCTACAACTGACACCTGAGCAGCTTAGTTCGTTGCCAGTAGAGCAA
CAACAGCAGGTGATTCAGCTTCAAAAGATGCTATCGGCTGGTAAATAA

Peptide Sequence

PEP ID

Os11t0176100-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:3795981:3801061:1 gene:Os11g0176100 transcript:Os11t0176100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nucleotide-binding, alpha-beta plait domain containing protein. (Os11t0176100-01)
Sequence

MAAAAPAGAQNRCVFVGNIPYDATEEQLVQICEEVGPVVSFRLVIDKETGKPKGYGFCEY
KDEETALSARRNLQGYEINGRQLRVDFAENGRNADRNREKGRGGPGMASSVDTQKQLAGT
PVVGDTGLHQPVGLPSAIHAASVMAGILGGSQTANVQNGLPVQYGLGNDPLTHYLARMSK
HQLYEIMSELKSLTSQNKDVANKLLQGIPQLSKALFQSQIMLGMVTPQMMQMAKSQQPSS
SLAQSSSHISEPFPQPDAMISSVPRPSASLPNPNVLQDPSAQLHNFPQYPHSSQPAGTIF
PHGSQSGVGIHPPIVSQLLGASSSVPPLPLATSGSLISQVQPPFMPHHPRPPAMPAGMQQ
LPLTHPHVPQVPAIPDIAQKEMRFPEQANRSTEFAHHPKLRKLEDGTSTPGIVNNNPAVY
PAPSQGMLPGGPSGSYNSAAVSFQQPENEVPQLTPDVESALLQQVLQLTPEQLSSLPVEQ
QQQVIQLQKMLSAGK

Transcript Sequence

Transcript ID

Os11t0176100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:3795981:3801061:1 gene:Os11g0176100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nucleotide-binding, alpha-beta plait domain containing protein. (Os11t0176100-01)
Sequence

TCATATCCGAACGACGCCGGAAATAGCAAAAAAAAAAAGAAAAGAAAAAGAAAAAGAAAA
CTCGCCGCCGCCGCCGCGGCCGCGCCCCCACCTCGATCTCCCGCGTCGCCACCCCGAACG
CCGCGCCGCCGATGCTGCCGCCCCGCCTCCGCCGCCCTGCCGCCGGCGACCTCTGCTGAC
GAGCATGGCCGCCGCGGCCCCCGCCGGCGCCCAGAACCGCTGCGTCTTCGTCGGGAACAT
TCCTTACGATGCGACGGAGGAGCAGCTCGTGCAGATTTGCGAGGAAGTCGGCCCTGTGGT
CTCATTCAGATTGGTTATTGATAAAGAAACAGGGAAGCCAAAGGGTTATGGGTTTTGTGA
GTACAAGGATGAGGAGACTGCTCTAAGTGCACGCCGGAACCTTCAAGGTTATGAAATTAA
TGGCCGTCAGTTACGTGTTGATTTTGCTGAAAATGGGAGGAATGCTGACAGAAACAGAGA
AAAGGGTCGTGGAGGACCTGGAATGGCATCCAGTGTTGATACTCAGAAACAATTAGCTGG
GACTCCGGTTGTAGGCGATACAGGTCTTCATCAGCCAGTTGGTCTTCCATCGGCTATTCA
TGCTGCATCTGTGATGGCTGGTATTCTTGGAGGATCTCAAACTGCAAATGTTCAAAATGG
TTTACCTGTCCAGTATGGGCTTGGAAATGACCCTCTTACTCATTATTTGGCCAGAATGTC
AAAGCACCAGTTGTATGAAATCATGTCTGAGTTGAAGTCCCTAACTAGTCAAAATAAGGA
TGTTGCCAACAAACTGCTGCAAGGAATTCCACAGCTGTCAAAGGCCCTATTTCAGTCACA
AATAATGCTTGGAATGGTGACGCCCCAGATGATGCAGATGGCAAAGAGCCAACAGCCCTC
TAGCTCCTTGGCACAATCATCATCTCACATAAGCGAACCATTTCCACAGCCAGATGCTAT
GATATCAAGTGTTCCAAGACCTTCTGCAAGCTTGCCAAACCCAAATGTCCTGCAGGACCC
TTCTGCACAGCTGCATAATTTTCCTCAGTATCCGCATTCATCTCAGCCTGCGGGCACAAT
ATTTCCACATGGAAGTCAGTCTGGGGTGGGCATACATCCTCCAATTGTATCTCAACTCCT
TGGTGCCTCTTCCAGTGTTCCTCCTCTACCCCTTGCTACCTCAGGAAGCCTGATATCGCA
GGTTCAGCCCCCATTTATGCCACATCACCCTAGGCCACCAGCTATGCCAGCGGGTATGCA
ACAACTACCATTGACTCATCCACATGTTCCCCAGGTACCTGCTATACCTGATATAGCACA
GAAGGAAATGAGGTTTCCTGAGCAAGCAAATCGTTCGACGGAGTTTGCTCATCATCCAAA
GTTGCGAAAATTGGAGGATGGAACATCCACACCTGGAATTGTAAACAACAATCCAGCTGT
TTATCCTGCTCCATCCCAAGGAATGCTCCCTGGTGGACCATCAGGGAGCTATAATTCTGC
TGCTGTTAGCTTCCAGCAGCCAGAGAACGAAGTGCCTCAGCTCACACCCGATGTTGAGTC
GGCTCTTCTGCAGCAAGTCCTACAACTGACACCTGAGCAGCTTAGTTCGTTGCCAGTAGA
GCAACAACAGCAGGTGATTCAGCTTCAAAAGATGCTATCGGCTGGTAAATAACCCCCATC
TGAATCAGCATACCAAATTGTTGATCAAGCTATACAGAGTTGTGGAAAAAATGGTACATT
TGTGAAGAAGAAACTGGGCGCATATGTCAACGGTTGATTTTGCCAAGCCACACCACCACA
CTTGTAACTTTGAAAATTGTTGGCATTTCTGGGCCATTAGTTTTGCTCAGGAGCATTCTT
TGGAGATAAAATGTGATGGGAAAAGGCCTCTTATTGTCCATCACTTATGTATCATTATAG
AAAAAAAGAATAATCTGTATCCATTTTTCTCATGTAATCTGTAGTGCAAGAACAATTTTG
TCTTTAGAACTCTCTTAAAAGTAGTCCAGAGCTGTTTAGTTTGCTGTGTAATCTCCCAGC
ATCTTACTTTCTCTGTAGCTGTTTCTTCTCTCCCGGACTACATGTTTTGAAGTTAGTTGC
TCAGATATTCGATT