Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0175900-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:3782692:3787314:-1 gene:Os11g0175900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to TPLATE; binding. (Os11t0175900-01)
Sequence

TCTCTGTTCAAAAGACTTCTTCAGATGGTGAGAAACTTGAGAGCCGAATCAGATCGTATG
CATGCATTGGCATGTATTTGTCGGACTGCTCTTTGTGTTGATCTTTTTGCAAAGGAGAGT
GTTCGAAGAGGTCAGAAGCCTGTTCCAGGAACAGATGTGATCTCTCTTTTTGAGGATGTA
AGGGCGAAGGACGACCTAAACAGCATTACAAGCAAAAGCTTGTTCAGGGAAGAGCTGGTT
GCTTCCCTGGTTGAAAGTTGTTTCCAGCTATCGCTTCCACTACCTGAGCAGAATAATTCT
GGCACAGAGAGCAGAGTTATAGGAGCATTAGCCTATGGAACTGGTTATGGTGCATTGAAT
TGGACAGAACCTGCTTTGGATGTGGTAGAAGTTTGCAGGCCTTGTGTTCTCTGGGATTGT
AATGGGCGCACCTATGCAATTGATTGCTATCTGAAGTTACTTGTTCGGCTTTGTCATATA
TATGATACTAGGGGTGGTGTAAAGACAATTAAGGCTGGTGCATCCCAAGATCAGATTCTA
AATGAGACAAGACTTAGAAATTTACAGCTGCAGCTTATCAGGGATCTTCGTGAGGTCCAT
ACCCCAAGAATATCATCACGGTTGATATGGGCGATTTCTGAACACTTCGATCTTGAAGGT
CTGGATCCTCTCTTAGCTGATGACCCAGAGGATCCACTGAATATTATCATATCTAACATG
CACAAGATTTTATTCAACACCGAATCCTCTACCACTACATCGAATAGGATACAAGATATG
CAGTCTGTCCTCATATGTGCCCAACGTTTGGGAACAAGAAATGCAAGAGCTGGCCAGCTC
CTCAGTAAAGAATTGGAAGAATATAGAGCAAGTACTTCAGCTGATTTTGTCACCAAACAT
CAGTCACGTTATGTCTTGCAGATAATAAAATATGTGACAAGCCATCCAGATAACAGGTGG
GTGGGCGTAGGTGATGCCACAGGGGATTATCCATTTAGCCACCACAAACTCACCGTCCAG
TTTTCAGAGGCGTCTGCTGCTCAAGACAGGAAATTGGAGGGGTTAGTACATAAAGCTATT
CTGGAGCTCTGGAGGCCAAGTCCCACACAGTTGAGTCTGCTACAGACAAAAGGGATTGGT
ACTTTGCATAAAGAGCTCCCAAAAGCGTATACTTTGACCGGCAGCAGTGATCCATGCTAT
ATTGAAGCGTATCATTTGGCAGATCCAACTGATGGCAGAATCACACTGCATCTAAAGATC
TTGAATTTGACTGAGCCGGAGCTCAACAGGGTTGATATCCGAGTTGGACTCTCTGGAGCA
CTGTATTACATGGATGGATTTTCCCGCACCGTTCGACACCTCCGTAATCTTGTTTCCCAG
GATCCAGTCCAAAGTAGTGTAACTGTCGGAGTTTCACATTTTGAGAGATGCTCCCTCTGG
GTTCAAGTCTTGTACTACCCATTTGATGGAAGTGTAGGATCTACTGATTATGAAGGAGAT
TATGAAGAGAGCTCACAAATGACGAGGCAAAAGCGCGCATTTCGGGCAGAGCTTGGGGAG
CCAGTTGTTTTGCGCTGCCAGCCATACAAGATCCCTCTTGCTGAACTTCTCTTGCCATAT
GAATGCTCTCCAGTTGAGTATTTCCGGTTATGGCCAAGTTTGCCAGCCATGGTGGAGTGC
ACTGGCACATACACATATGAAGGCAGTGGTTTCAAGGCCACTGCTGCTCAGCAGTATGAT
AGCTCTCCTTTCCTCAGTGGGTTGAAGTCGATTTCTTCAAAGCCTTTCCATCAAGTTTGC
TCTCATTTCATCAGAACAGTAGCTGGGTTCCAGTTATGCTACGCTGCGAAGACTTGGTTT
GGTGGATTTGTGGGCATGATGATCTTTGGTGCAAGCGAGGTCAGCCGGAACGTTGATCTG
GGCGACGAAACAACCACAATGATCTGCAAATTCGTAGTGCGTGCATCCGATGAATCGATC
ACAAGAGAGATCGAATCAGACCTCCAGGGCTGGATGGACGATATCACCGATGGCGCCGTG
GAATACATGCCCGAGGATGAGGTGAAGAGCGCGGCCGCTGAGCGGCTGAAGATCTCCATG
GAGAGAATAGCCCTGCTCAAGGCAGCCAAACCGAAGGTGCCGCCTGCGAAAACAAAGGAA
GAAGAGGAAGAGGAGAAGAAGCAAAACGAGGACCTGGATGAATTCGGGAACCCCAAGGGC
CCCTCGACGCTTTCAAAGCTCACGGCGGAGGAAGCTGAGCACCGTGCCCTCCAGGCGGCC
GTTCTGCAGGAGTGGCATCAGCTGTGCAAGGAGAAAGCCATGAAAGCACAGTGA

Peptide Sequence

PEP ID

Os11t0175900-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:3782692:3787314:-1 gene:Os11g0175900 transcript:Os11t0175900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to TPLATE; binding. (Os11t0175900-01)
Sequence

SLFKRLLQMVRNLRAESDRMHALACICRTALCVDLFAKESVRRGQKPVPGTDVISLFEDV
RAKDDLNSITSKSLFREELVASLVESCFQLSLPLPEQNNSGTESRVIGALAYGTGYGALN
WTEPALDVVEVCRPCVLWDCNGRTYAIDCYLKLLVRLCHIYDTRGGVKTIKAGASQDQIL
NETRLRNLQLQLIRDLREVHTPRISSRLIWAISEHFDLEGLDPLLADDPEDPLNIIISNM
HKILFNTESSTTTSNRIQDMQSVLICAQRLGTRNARAGQLLSKELEEYRASTSADFVTKH
QSRYVLQIIKYVTSHPDNRWVGVGDATGDYPFSHHKLTVQFSEASAAQDRKLEGLVHKAI
LELWRPSPTQLSLLQTKGIGTLHKELPKAYTLTGSSDPCYIEAYHLADPTDGRITLHLKI
LNLTEPELNRVDIRVGLSGALYYMDGFSRTVRHLRNLVSQDPVQSSVTVGVSHFERCSLW
VQVLYYPFDGSVGSTDYEGDYEESSQMTRQKRAFRAELGEPVVLRCQPYKIPLAELLLPY
ECSPVEYFRLWPSLPAMVECTGTYTYEGSGFKATAAQQYDSSPFLSGLKSISSKPFHQVC
SHFIRTVAGFQLCYAAKTWFGGFVGMMIFGASEVSRNVDLGDETTTMICKFVVRASDESI
TREIESDLQGWMDDITDGAVEYMPEDEVKSAAAERLKISMERIALLKAAKPKVPPAKTKE
EEEEEKKQNEDLDEFGNPKGPSTLSKLTAEEAEHRALQAAVLQEWHQLCKEKAMKAQ

Transcript Sequence

Transcript ID

Os11t0175900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:3782692:3787314:-1 gene:Os11g0175900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to TPLATE; binding. (Os11t0175900-01)
Sequence

TGTCTCTGTTCAAAAGACTTCTTCAGATGGTGAGAAACTTGAGAGCCGAATCAGATCGTA
TGCATGCATTGGCATGTATTTGTCGGACTGCTCTTTGTGTTGATCTTTTTGCAAAGGAGA
GTGTTCGAAGAGGTCAGAAGCCTGTTCCAGGAACAGATGTGATCTCTCTTTTTGAGGATG
TAAGGGCGAAGGACGACCTAAACAGCATTACAAGCAAAAGCTTGTTCAGGGAAGAGCTGG
TTGCTTCCCTGGTTGAAAGTTGTTTCCAGCTATCGCTTCCACTACCTGAGCAGAATAATT
CTGGCACAGAGAGCAGAGTTATAGGAGCATTAGCCTATGGAACTGGTTATGGTGCATTGA
ATTGGACAGAACCTGCTTTGGATGTGGTAGAAGTTTGCAGGCCTTGTGTTCTCTGGGATT
GTAATGGGCGCACCTATGCAATTGATTGCTATCTGAAGTTACTTGTTCGGCTTTGTCATA
TATATGATACTAGGGGTGGTGTAAAGACAATTAAGGCTGGTGCATCCCAAGATCAGATTC
TAAATGAGACAAGACTTAGAAATTTACAGCTGCAGCTTATCAGGGATCTTCGTGAGGTCC
ATACCCCAAGAATATCATCACGGTTGATATGGGCGATTTCTGAACACTTCGATCTTGAAG
GTCTGGATCCTCTCTTAGCTGATGACCCAGAGGATCCACTGAATATTATCATATCTAACA
TGCACAAGATTTTATTCAACACCGAATCCTCTACCACTACATCGAATAGGATACAAGATA
TGCAGTCTGTCCTCATATGTGCCCAACGTTTGGGAACAAGAAATGCAAGAGCTGGCCAGC
TCCTCAGTAAAGAATTGGAAGAATATAGAGCAAGTACTTCAGCTGATTTTGTCACCAAAC
ATCAGTCACGTTATGTCTTGCAGATAATAAAATATGTGACAAGCCATCCAGATAACAGGT
GGGTGGGCGTAGGTGATGCCACAGGGGATTATCCATTTAGCCACCACAAACTCACCGTCC
AGTTTTCAGAGGCGTCTGCTGCTCAAGACAGGAAATTGGAGGGGTTAGTACATAAAGCTA
TTCTGGAGCTCTGGAGGCCAAGTCCCACACAGTTGAGTCTGCTACAGACAAAAGGGATTG
GTACTTTGCATAAAGAGCTCCCAAAAGCGTATACTTTGACCGGCAGCAGTGATCCATGCT
ATATTGAAGCGTATCATTTGGCAGATCCAACTGATGGCAGAATCACACTGCATCTAAAGA
TCTTGAATTTGACTGAGCCGGAGCTCAACAGGGTTGATATCCGAGTTGGACTCTCTGGAG
CACTGTATTACATGGATGGATTTTCCCGCACCGTTCGACACCTCCGTAATCTTGTTTCCC
AGGATCCAGTCCAAAGTAGTGTAACTGTCGGAGTTTCACATTTTGAGAGATGCTCCCTCT
GGGTTCAAGTCTTGTACTACCCATTTGATGGAAGTGTAGGATCTACTGATTATGAAGGAG
ATTATGAAGAGAGCTCACAAATGACGAGGCAAAAGCGCGCATTTCGGGCAGAGCTTGGGG
AGCCAGTTGTTTTGCGCTGCCAGCCATACAAGATCCCTCTTGCTGAACTTCTCTTGCCAT
ATGAATGCTCTCCAGTTGAGTATTTCCGGTTATGGCCAAGTTTGCCAGCCATGGTGGAGT
GCACTGGCACATACACATATGAAGGCAGTGGTTTCAAGGCCACTGCTGCTCAGCAGTATG
ATAGCTCTCCTTTCCTCAGTGGGTTGAAGTCGATTTCTTCAAAGCCTTTCCATCAAGTTT
GCTCTCATTTCATCAGAACAGTAGCTGGGTTCCAGTTATGCTACGCTGCGAAGACTTGGT
TTGGTGGATTTGTGGGCATGATGATCTTTGGTGCAAGCGAGGTCAGCCGGAACGTTGATC
TGGGCGACGAAACAACCACAATGATCTGCAAATTCGTAGTGCGTGCATCCGATGAATCGA
TCACAAGAGAGATCGAATCAGACCTCCAGGGCTGGATGGACGATATCACCGATGGCGCCG
TGGAATACATGCCCGAGGATGAGGTGAAGAGCGCGGCCGCTGAGCGGCTGAAGATCTCCA
TGGAGAGAATAGCCCTGCTCAAGGCAGCCAAACCGAAGGTGCCGCCTGCGAAAACAAAGG
AAGAAGAGGAAGAGGAGAAGAAGCAAAACGAGGACCTGGATGAATTCGGGAACCCCAAGG
GCCCCTCGACGCTTTCAAAGCTCACGGCGGAGGAAGCTGAGCACCGTGCCCTCCAGGCGG
CCGTTCTGCAGGAGTGGCATCAGCTGTGCAAGGAGAAAGCCATGAAAGCACAGTGAGGTT
CTGTTTTTTTTTTCCTTTTTTTTTGGCATGCGGCACATGTACAATTTTGTATCTGTTTCT
CATTTTTTGCCCCCAATTTGTGTATGTATTACATGTGTGTCCCTTTTACCCCCATTTTGT
GTATGTATGTATTATCAGT