Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0175000-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:3721900:3723603:-1 gene:Os11g0175000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Domain of unknown function DUF1618 domain containing protein. (Os11t0175000-01)
Sequence

ATGGACCTCGTCGCTGACCACGACGACCACTCCGTAGTGCTCCTCGAGATGCGTTACGAC
AAGGAAGGCTACGACGAATTCGGGATCGATTACTTCGTCTACAATTACGCCGCCGCCGAC
GACGACGGCGACGACGATGACCCACCACGGCCGCCGTCGTTGTCGCTGCTCCCGTCCTAC
TGGGATCCATTGGACGAGGACGAAAGAAGGCGGCGTCAGGATCCGAAGGTGCACCAGCTG
GACGCAGATAGCACCGGCCTCCTCCGCCGCCGCCGCCGCCGCCACGGCGAGGACGACCTC
GTGGTGGCGGAGCTCATCACCACCAGGGAGAGCGAGAGCAGCAAGCTGGAGGAGGTCAAG
CTCCTCGTGCTCCGCTCCGGCGAGTGGAGCGTCACGCGGGCGGAGATCATCCACGACGGC
AGCAAGGGCGAGGAGCTCTCCTACTGGGAGACCGACATGGCCGTCCCCGTCGGCGACCGG
CGGCTCTGCTGGGTCGACCTGTACCGCGGCGTCATCCTCTGCGGCGACGACCTGTTCGAC
GAAATTCCCCCGCGGCTGCAGTACGTGCCGCTCCCCGTGGAGGCCCCCGCCGGCGAATTC
GAGGAGGACAGCGACGACGAGAGCACGCGGAGATGCCTGATGGCGAGCTCAAGTTCATCG
ACGTCTTCCCCCGCTGCTGCTGCGGCGACCCCGGCGCCACCCTCTGCGACCATTCTCGCC
ACGCCTTCGTCATCAACATCTGGACACTCAGGATCGACGGCGACGGCGACCACACCATGT
TGTCATGGACCATGGACGCCATGA

Peptide Sequence

PEP ID

Os11t0175000-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:3721900:3723603:-1 gene:Os11g0175000 transcript:Os11t0175000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Domain of unknown function DUF1618 domain containing protein. (Os11t0175000-01)
Sequence

MDLVADHDDHSVVLLEMRYDKEGYDEFGIDYFVYNYAAADDDGDDDDPPRPPSLSLLPSY
WDPLDEDERRRRQDPKVHQLDADSTGLLRRRRRRHGEDDLVVAELITTRESESSKLEEVK
LLVLRSGEWSVTRAEIIHDGSKGEELSYWETDMAVPVGDRRLCWVDLYRGVILCGDDLFD
EIPPRLQYVPLPVEAPAGEFEEDSDDESTRRCLMASSSSSTSSPAAAAATPAPPSATILA
TPSSSTSGHSGSTATATTPCCHGPWTP

Transcript Sequence

Transcript ID

Os11t0175000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:3721900:3723603:-1 gene:Os11g0175000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Domain of unknown function DUF1618 domain containing protein. (Os11t0175000-01)
Sequence

ATACCGGTCAGAGATGGGTTATCTGTGACGGGTGTTTCATCCGTCACAGGTGATTTTGTC
ATCAGTGACCACTAATCACTGACCAAGACCAAACCCGTCAAAGGTGAGGGTTTGGGCCCG
TCAGAGATGACCTGGTCCGGCGTAGTGTGAGCTTCCGCTGCTCCCCGTGCGGCAAGGACG
GACCCTCGATGGACCTCGTCGCTGACCACGACGACCACTCCGTAGTGCTCCTCGAGATGC
GTTACGACAAGGAAGGCTACGACGAATTCGGGATCGATTACTTCGTCTACAATTACGCCG
CCGCCGACGACGACGGCGACGACGATGACCCACCACGGCCGCCGTCGTTGTCGCTGCTCC
CGTCCTACTGGGATCCATTGGACGAGGACGAAAGAAGGCGGCGTCAGGATCCGAAGGTGC
ACCAGCTGGACGCAGATAGCACCGGCCTCCTCCGCCGCCGCCGCCGCCGCCACGGCGAGG
ACGACCTCGTGGTGGCGGAGCTCATCACCACCAGGGAGAGCGAGAGCAGCAAGCTGGAGG
AGGTCAAGCTCCTCGTGCTCCGCTCCGGCGAGTGGAGCGTCACGCGGGCGGAGATCATCC
ACGACGGCAGCAAGGGCGAGGAGCTCTCCTACTGGGAGACCGACATGGCCGTCCCCGTCG
GCGACCGGCGGCTCTGCTGGGTCGACCTGTACCGCGGCGTCATCCTCTGCGGCGACGACC
TGTTCGACGAAATTCCCCCGCGGCTGCAGTACGTGCCGCTCCCCGTGGAGGCCCCCGCCG
GCGAATTCGAGGAGGACAGCGACGACGAGAGCACGCGGAGATGCCTGATGGCGAGCTCAA
GTTCATCGACGTCTTCCCCCGCTGCTGCTGCGGCGACCCCGGCGCCACCCTCTGCGACCA
TTCTCGCCACGCCTTCGTCATCAACATCTGGACACTCAGGATCGACGGCGACGGCGACCA
CACCATGTTGTCATGGACCATGGACGCCATGATCGACGCCACCGAGCTCTGGTCCCTCGA
CGCCTACGCCGGCATCCCACGTGTCATCCCGGAGTACCCTGTCATCAGCACAGACGACGC
TGACGTCATCTGCTTCCTCGTGACCGAGCCATACAATCACAAACAGGGGAAACCCTATTT
CGAAAGAACGACATGGGAGATGACGATGGACACCAAGAACAAGACACTGCTATCAGTATG
CACATACGATGATGATATTTCCCAACGAGAGCCATCTTATGGACACACTTACATTCCAAA
CAATTTTGCTACAAAGCCACCACCGGCCATCATCTGCGAGGCAACGACGACGATCACAAC
CGAAATCAACGGTAATAATCTGTCGCAATCTTTGCCATCTGCCAAACATCTGCAGGTGTC
AAGGATGGCTCCTGAGGAGATATTGGTAGCACTTGAAGAGATTCCTGAGCTTTCTCGCGA
TGATTTGCTGAAAGCGTATAGTATTCTTTGCCGTGACAATGGCCGCCTATTTAGGTCTCT
TCTTGGGCTCCCAATGAGTCTGAGGAAGAAGTGGCTGTTGATAGAAATTAAGGCTTGTCG
AGATTGTCCCGTCTGCAGTGCATGTACAACTGATGGCCTATAACATGATTGATTAAAATA
TTTGTTATAGTGGTACTTGTATACACTTGTGGGATTAACTGTGCTAATTCTGCTGAATTA
AGTTCCTTATTTGTTGTTTTTATT