Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0171500-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:3495277:3499934:-1 gene:Os11g0171500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CALCIUM-DEPENDENT PROTEIN KINASE 24 description:Calcium-dependent protein kinase (Os11t0171500-01)
Sequence

ATGCAGCCGGACCCGAGCGGGAGCGGCGGCGACGGCAACGCCAATGCGAAGGCGAAGCTG
GCGCCGCCGCCGGTGACGGCGGCGGGAGGTCGGCCGGTGTCGGTGCTGCCGCACAAGACG
GCGAACGTGCGCGACCACTACCGCATCGGGAAGAAGCTCGGGCAGGGGCAGTTCGGGACG
ACGTACCTGTGCGTGGACAAGGCGAGCGGCGGCGAGTTCGCGTGCAAGTCCATCCCCAAG
CGGAAGCTGCTGTGCCGGGAGGACTACGAGGACGTGTGGCGCGAGATCCAGATCATGCAC
CACCTCTCCGAGCACCCCAACGTCGTCCGCATCCGCGGCGCCTACGAGGACGCGCTGTTC
GTCCACATCGTCATGGAGCTCTGCGCCGGCGGCGAGCTCTTCGACCGCATCGTCGCCAAG
GGCCACTACACCGAGCGCGCCGCCGCGCAGCTCATCCGCACCATCGTCGCCGTCGTCGAG
GGATGCCACTCGCTCGGCGTCATGCACCGGGACCTCAAGCCCGAGAACTTCCTCTTCGCC
AGCGCCGCCGAGGACGCCCCCCTCAAGGCCACTGATTTCGGCCTCTCCATGTTCTACAAG
CCTGGTGATAAGTTCTCTGATGTTGTTGGGAGCCCCTATTATGTTGCACCTGAGGTACTT
CAGAAATGCTATGGTCCAGAATCTGATGTCTGGAGTGCTGGGGTAATTCTTTACATTTTG
CTATGTGGTGTTCCACCATTTTGGGCAGAAACTGAAGCTGGAATTTTCAGGCAGATTCTA
CGAGGCAAACTTGATTTTGAATCTGAACCCTGGCCTAGCATCTCTGACAGTGCTAAAGAT
CTAGTCCGTAATATGCTTTGCCGGGATCCTACAAAGAGACTTACAGCCCATGAGGTTCTC
TGTCATCCATGGATTGTTGATGATGCTGTGGCACCTGACAAGCCTATTGATTCTGCTGTT
TTGTCAAGACTGAAGCACTTTTCGGCAATGAACAAGCTCAAGAAGATGGCATTGAGGGTT
ATTGCTGAAAGCCTGTCTGAGGAAGAGATTGGAGGACTAAAGGAGCTATTCAAAATGATT
GATACTGACGATAGTGGAACTATAACTTTTGATGAGCTGAAAGAGGGCTTGAAAAGGGTG
GGTTCAGAATTAACAGAACATGAAATCCAGGCTTTAATGGAAGCGGCTGATATCGACAAC
AGTGGAACCATCGACTATGGTGAATTCATTGCTGCTACTCTCCACATGAATAAGCTAGAG
AGGGAGGAAAACTTAGTATCAGCATTCTCATTTTTCGACAAAGATGGAAGTGGTTTCATA
ACTATTGATGAGCTGTCACAAGCATGCCGCGAATTTGGCCTTGATGATCTTCACCTTGAG
GATATGATTAAAGATGTTGATCAAAACAATGACGGACAAATTGACTACAGCGAGTTCACG
GCGATGATGAGAAAGGGCAATGCTGGTGGAGCTGGAAGGAGAACCATGAGGAACAGCTTG
CAGTTGAATCTTGGTGAGATCTTGAACCCCAGCAACAGCTAA

Peptide Sequence

PEP ID

Os11t0171500-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:3495277:3499934:-1 gene:Os11g0171500 transcript:Os11t0171500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CALCIUM-DEPENDENT PROTEIN KINASE 24 description:Calcium-dependent protein kinase (Os11t0171500-01)
Sequence

MQPDPSGSGGDGNANAKAKLAPPPVTAAGGRPVSVLPHKTANVRDHYRIGKKLGQGQFGT
TYLCVDKASGGEFACKSIPKRKLLCREDYEDVWREIQIMHHLSEHPNVVRIRGAYEDALF
VHIVMELCAGGELFDRIVAKGHYTERAAAQLIRTIVAVVEGCHSLGVMHRDLKPENFLFA
SAAEDAPLKATDFGLSMFYKPGDKFSDVVGSPYYVAPEVLQKCYGPESDVWSAGVILYIL
LCGVPPFWAETEAGIFRQILRGKLDFESEPWPSISDSAKDLVRNMLCRDPTKRLTAHEVL
CHPWIVDDAVAPDKPIDSAVLSRLKHFSAMNKLKKMALRVIAESLSEEEIGGLKELFKMI
DTDDSGTITFDELKEGLKRVGSELTEHEIQALMEAADIDNSGTIDYGEFIAATLHMNKLE
REENLVSAFSFFDKDGSGFITIDELSQACREFGLDDLHLEDMIKDVDQNNDGQIDYSEFT
AMMRKGNAGGAGRRTMRNSLQLNLGEILNPSNS

Transcript Sequence

Transcript ID

Os11t0171500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:3495277:3499934:-1 gene:Os11g0171500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CALCIUM-DEPENDENT PROTEIN KINASE 24 description:Calcium-dependent protein kinase (Os11t0171500-01)
Sequence

ATAGATACGACCTGGCTGCCCTCACAAAAATACTTCACCAAACCACCCTCCTCCTCCTCC
CCCTTTACCATTTCCAAGTTCCAACCCCCAAAAAAAATCCAACCAAAAAGCGGAGATTTT
CCAACTCTTATCATCTCCTCCTCCTCCTCCTCGTCATCGTCATCACCAGCACACACCCGA
GAGAAAAAAATCCTATAAAGAAATGGATTGAGCCATCACCCAACGCCGCCAAGATCCTGT
CCTCTTGTGTGCGCAACCTGTAGCTCCACCTCCACGCAGGATCAACACCCAAATCCCCCC
ATCTTCTTTTCTTTTTCGTTTCGTTTCTGCAAGATTTGCATCTTCTTCTTCTTCCTCCGA
GGAGTGAGTGACACCTGAGATAGCGAGAGCGAGATTTTCTTCGGTTTTTTTGTTCCTCTT
TTTGGCCATAAACCTCCCATAAAGCTCGGTTTCTTGGTTCGTTTTTTCTTTCTTTCTTCC
TCTCCTTCGAGAATCGCCCGAGTGTGAAATCCAAGATCCCGAATTCCGTGTCTTCTTCTT
CTTCCGTAGAAATCCCGGGGTGGGCAAAGCGGTGGGATTTCTGGAGAGGGGGAGAGCGCT
ACAAGGCAAGAAGCTTGGGTGTCCGTAGTCCGTACGGTTCTTGATCTGGGGTCGCCGCCA
ATGCAGCCGGACCCGAGCGGGAGCGGCGGCGACGGCAACGCCAATGCGAAGGCGAAGCTG
GCGCCGCCGCCGGTGACGGCGGCGGGAGGTCGGCCGGTGTCGGTGCTGCCGCACAAGACG
GCGAACGTGCGCGACCACTACCGCATCGGGAAGAAGCTCGGGCAGGGGCAGTTCGGGACG
ACGTACCTGTGCGTGGACAAGGCGAGCGGCGGCGAGTTCGCGTGCAAGTCCATCCCCAAG
CGGAAGCTGCTGTGCCGGGAGGACTACGAGGACGTGTGGCGCGAGATCCAGATCATGCAC
CACCTCTCCGAGCACCCCAACGTCGTCCGCATCCGCGGCGCCTACGAGGACGCGCTGTTC
GTCCACATCGTCATGGAGCTCTGCGCCGGCGGCGAGCTCTTCGACCGCATCGTCGCCAAG
GGCCACTACACCGAGCGCGCCGCCGCGCAGCTCATCCGCACCATCGTCGCCGTCGTCGAG
GGATGCCACTCGCTCGGCGTCATGCACCGGGACCTCAAGCCCGAGAACTTCCTCTTCGCC
AGCGCCGCCGAGGACGCCCCCCTCAAGGCCACTGATTTCGGCCTCTCCATGTTCTACAAG
CCTGGTGATAAGTTCTCTGATGTTGTTGGGAGCCCCTATTATGTTGCACCTGAGGTACTT
CAGAAATGCTATGGTCCAGAATCTGATGTCTGGAGTGCTGGGGTAATTCTTTACATTTTG
CTATGTGGTGTTCCACCATTTTGGGCAGAAACTGAAGCTGGAATTTTCAGGCAGATTCTA
CGAGGCAAACTTGATTTTGAATCTGAACCCTGGCCTAGCATCTCTGACAGTGCTAAAGAT
CTAGTCCGTAATATGCTTTGCCGGGATCCTACAAAGAGACTTACAGCCCATGAGGTTCTC
TGTCATCCATGGATTGTTGATGATGCTGTGGCACCTGACAAGCCTATTGATTCTGCTGTT
TTGTCAAGACTGAAGCACTTTTCGGCAATGAACAAGCTCAAGAAGATGGCATTGAGGGTT
ATTGCTGAAAGCCTGTCTGAGGAAGAGATTGGAGGACTAAAGGAGCTATTCAAAATGATT
GATACTGACGATAGTGGAACTATAACTTTTGATGAGCTGAAAGAGGGCTTGAAAAGGGTG
GGTTCAGAATTAACAGAACATGAAATCCAGGCTTTAATGGAAGCGGCTGATATCGACAAC
AGTGGAACCATCGACTATGGTGAATTCATTGCTGCTACTCTCCACATGAATAAGCTAGAG
AGGGAGGAAAACTTAGTATCAGCATTCTCATTTTTCGACAAAGATGGAAGTGGTTTCATA
ACTATTGATGAGCTGTCACAAGCATGCCGCGAATTTGGCCTTGATGATCTTCACCTTGAG
GATATGATTAAAGATGTTGATCAAAACAATGACGGACAAATTGACTACAGCGAGTTCACG
GCGATGATGAGAAAGGGCAATGCTGGTGGAGCTGGAAGGAGAACCATGAGGAACAGCTTG
CAGTTGAATCTTGGTGAGATCTTGAACCCCAGCAACAGCTAAACTCCTACAGGAAGGCCA
TGGCTGTTACATGCCATCATTGTCTGAATCTCTGCACGCCTCATCAGCTGGACTAATCTC
TAAGAGGGCAAAGCCGTTGAGTGAATTGTGCTTTGGCGTTACATGAGACGCTGAAGAATT
TTCGTAGCAGTAATAGCTACAGCTACTAGAGTGTAAGAGAAATTGGCGTTATGTGATCGT
AATATCCTATCAGTGTAACTGATCTTAGATGATGCTGGAGATGATAGTACAATGAACAGC
TTATATGTATTCCTGTCCTTGTAGACTGAACATTGTTGATAGTTGGGGAATGCTCTTGGC
ATC