Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0163500-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:3091820:3096321:1 gene:Os11g0163500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Homeodomain-like containing protein. (Os11t0163500-01)
Sequence

ATGTCTATCCTCCTTTGGCTATCCCATGTACTGCTGAAACTTCATTACTTGAGGTTATAT
TCATGTGCATCCTCGTGCACTCCTGTGTCCATCTTATATGGTACCAACAAGAAGTTGAAG
TGTTTGGGTGATCGCTTTGGGGAAATGGAAGGCAGCAACCCACCTGGTAATATGACACAG
GGACCTTCCTATGGGAGTTTAGATTTGCATGGTATCTCCAAGCAAATGCATCCTCCAAAC
TCAGGAAATCAGGGCTTCAACCAGCCTCAGATACCAGGGAATTTTACCATTCCTATGGAT
AGGGTTACAGAGCCTGATAACATCTCTGATGGAGTTCAGTTAGGACAACATGGGAAGATT
GCCCATCATCACCATCACCACAGACACCACTCAAAGAACCATGGGAGTGATGAAGAGGAG
CACGATATGAATGAGGATGCTGCTGATGGCAAAGACAAGAAGGGCTCTCCATGGCATCGG
ATGAAGTGGACAGATTCAATGGTGAAGCTTTTGATTACTGCAGTATCCTACACAGGGGAG
GATCCTGGAGCTGATTTAGGCGGTGGGAGGAGGAACTATTCAATGATGCAAAAGAAGGGA
AAATGGAAAGCAATATCAAAGGTCATGGGCGAGAGAGGTTGCCATGTGTCGCCACAGCAG
TGTGAGGATAAGTTCAATGACCTTAATAAGAGATACAAAAGACTAACAGATATCCTTGGA
AGGGGTACTGCTTGTAATGTTGTGGAGAATCACTCACTTCTTGATCACATGGATATTTCT
GAGAAGATGAAAGAGGATGCAAGGAAGATACTGAACTCCAAACACTTGTTCTATGAAGAG
ATGTGTTCCTACCATAATAATAACCGTATAAGTCTGCCTGAAGATCCCGCACTTCAGCAG
TCACTACAGCTTGCTCTTAGATGTAAAGAGGATAATGATTTCATGAGGCATGCAAGTGGA
GATGCTGAACTAGATGATGATCAGAGTGAAGATTCAGATTATGAGGAGAATGAGGAAGAA
CATCGAGCAGTTGATACCAATATAAGGGGCCCCTCAATGCATAAAAGGATGTGGCATGTT
GTAGATCATGGTGATGTAGGTTTTGTCACCTCATGCTCGAATGATGGTAGTGGGAGGTCT
GATCCCTATGACGTGTTGGATATCAACAAACCCTTTCCAGATGGATGTGATTTGGCTTTG
GTGCAAAAAGACTTGGCTCTGAAAGCAGCAGAGATTCAAAAACATCGTTTGCAGATTGAA
ACCAAGGCTGTGCAACTCGCAAAGCAACGTCTCAAGTGGGAGATGTTCAGGAAGAACAAG
GACTTGGAATTGGAAAAGTTGGCGTTGGAGAATGAACAAATGATGCTTCAGAATAAGCGG
TTTGAGCTTGACCTAAGACACAAGGAGCTAGAACTTGAGATTAAGATAAAGGGCAATGCT
AATCATCCATGA

Peptide Sequence

PEP ID

Os11t0163500-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:3091820:3096321:1 gene:Os11g0163500 transcript:Os11t0163500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Homeodomain-like containing protein. (Os11t0163500-01)
Sequence

MSILLWLSHVLLKLHYLRLYSCASSCTPVSILYGTNKKLKCLGDRFGEMEGSNPPGNMTQ
GPSYGSLDLHGISKQMHPPNSGNQGFNQPQIPGNFTIPMDRVTEPDNISDGVQLGQHGKI
AHHHHHHRHHSKNHGSDEEEHDMNEDAADGKDKKGSPWHRMKWTDSMVKLLITAVSYTGE
DPGADLGGGRRNYSMMQKKGKWKAISKVMGERGCHVSPQQCEDKFNDLNKRYKRLTDILG
RGTACNVVENHSLLDHMDISEKMKEDARKILNSKHLFYEEMCSYHNNNRISLPEDPALQQ
SLQLALRCKEDNDFMRHASGDAELDDDQSEDSDYEENEEEHRAVDTNIRGPSMHKRMWHV
VDHGDVGFVTSCSNDGSGRSDPYDVLDINKPFPDGCDLALVQKDLALKAAEIQKHRLQIE
TKAVQLAKQRLKWEMFRKNKDLELEKLALENEQMMLQNKRFELDLRHKELELEIKIKGNA
NHP

Transcript Sequence

Transcript ID

Os11t0163500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:3091820:3096321:1 gene:Os11g0163500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Homeodomain-like containing protein. (Os11t0163500-01)
Sequence

GTAGGCTCGTCGCGGCCACGTACGCCATCCCGAGCTCGGGGGCTACCCCGGTCGGAGGCG
GAGCGCTTGGGGGCCGGGGTTTAATCGTGCGGAGGACTCGGTAGGGCTCGCCATACCTCG
CGCCGTCCGGCGGCGCAGAGCGCGGCGTCGCCGCTGGGGAGAAGGACGGACTCAACGAGA
CGAGCGAGCGACGGCCGACAGGCGAAGGCGTTCTCGCTTCTTGGCCTCTCGCCGTTGAAT
TGGAGACCCACATTGGGCTTGTTTTGTGTGTTACTAGCATCACCAAGAGTTCCCCTACTA
CTCCCAATTTCAAATTTTGGGGTTTTTCGAGCAAAAAAAATGGATCCAACAGATATCCAA
ACCAGCTTCCAAAAATTTTGAGACCCTAATCCCGTGTTTCCGTTCTCCACCAGTAGAGAA
TACCTCCCGCTCCCAATCCACTGCAGCCGGGCAGTTTTCGCGCGCTGCCGAGGTGCTTGG
TTCCCCCATCTCCATTGATTCCCCATCTCGTGCGATTGGCGGAGCTGATGAGTGACGACA
GCCACGGGCGAGCGGGAGGTGGCACGTCGACAGGCGGCGGAGGGCCGCCAGCGCAGCTGC
GGCAGCCGGCAAGGGCGGCTGGGTGGGCTGCAGGCTGTGGCTGCAGTTGGGCAGCGCGGC
AGTAGCAGGTGGCGGGCCAACAAGTAGCAGGGCAGGCCGGCAGCAGCAGCAGATCAACAG
GATGATTCAATCTTTGCTATTTGCCTTATCCACCTTAAAGATAGCCTATTAATCGATCCA
TCTTTGCTAGGAGTATCTGTTTTGCAGATTATTTATATGTCTATCCTCCTTTGGCTATCC
CATGTACTGCTGAAACTTCATTACTTGAGGTTATATTCATGTGCATCCTCGTGCACTCCT
GTGTCCATCTTATATGGTACCAACAAGAAGTTGAAGTGTTTGGGTGATCGCTTTGGGGAA
ATGGAAGGCAGCAACCCACCTGGTAATATGACACAGGGACCTTCCTATGGGAGTTTAGAT
TTGCATGGTATCTCCAAGCAAATGCATCCTCCAAACTCAGGAAATCAGGGCTTCAACCAG
CCTCAGATACCAGGGAATTTTACCATTCCTATGGATAGGGTTACAGAGCCTGATAACATC
TCTGATGGAGTTCAGTTAGGACAACATGGGAAGATTGCCCATCATCACCATCACCACAGA
CACCACTCAAAGAACCATGGGAGTGATGAAGAGGAGCACGATATGAATGAGGATGCTGCT
GATGGCAAAGACAAGAAGGGCTCTCCATGGCATCGGATGAAGTGGACAGATTCAATGGTG
AAGCTTTTGATTACTGCAGTATCCTACACAGGGGAGGATCCTGGAGCTGATTTAGGCGGT
GGGAGGAGGAACTATTCAATGATGCAAAAGAAGGGAAAATGGAAAGCAATATCAAAGGTC
ATGGGCGAGAGAGGTTGCCATGTGTCGCCACAGCAGTGTGAGGATAAGTTCAATGACCTT
AATAAGAGATACAAAAGACTAACAGATATCCTTGGAAGGGGTACTGCTTGTAATGTTGTG
GAGAATCACTCACTTCTTGATCACATGGATATTTCTGAGAAGATGAAAGAGGATGCAAGG
AAGATACTGAACTCCAAACACTTGTTCTATGAAGAGATGTGTTCCTACCATAATAATAAC
CGTATAAGTCTGCCTGAAGATCCCGCACTTCAGCAGTCACTACAGCTTGCTCTTAGATGT
AAAGAGGATAATGATTTCATGAGGCATGCAAGTGGAGATGCTGAACTAGATGATGATCAG
AGTGAAGATTCAGATTATGAGGAGAATGAGGAAGAACATCGAGCAGTTGATACCAATATA
AGGGGCCCCTCAATGCATAAAAGGATGTGGCATGTTGTAGATCATGGTGATGTAGGTTTT
GTCACCTCATGCTCGAATGATGGTAGTGGGAGGTCTGATCCCTATGACGTGTTGGATATC
AACAAACCCTTTCCAGATGGATGTGATTTGGCTTTGGTGCAAAAAGACTTGGCTCTGAAA
GCAGCAGAGATTCAAAAACATCGTTTGCAGATTGAAACCAAGGCTGTGCAACTCGCAAAG
CAACGTCTCAAGTGGGAGATGTTCAGGAAGAACAAGGACTTGGAATTGGAAAAGTTGGCG
TTGGAGAATGAACAAATGATGCTTCAGAATAAGCGGTTTGAGCTTGACCTAAGACACAAG
GAGCTAGAACTTGAGATTAAGATAAAGGGCAATGCTAATCATCCATGATCTTTGTTCTGT
TAGCACTTCATTTCGCAATATGGTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAA
GATGGTAGAGGTGGCAGATTGTTTATGCAAGATGGTAGAGGTGGCAGATTATCTGTGACT
ACTGACAAGTGACAACAATTTCAATGCTTTATAGCTAGCTCAGTGATCCTCTCCTCTTGT
TGTTTATATATCATTATATCTCCTGATTCTCTCTACTTGTAAAATTTCCATGTGATACTG
GGCTCCATCTGTATTCTAAAGTTTTCATCATTTTTTTCTATCCAACTTTGTTTTACTCAA
TC