Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0153900-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:2529744:2532592:1 gene:Os11g0153900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RbH description:Ribonuclease HII/HIII family protein. (Os11t0153900-01)
Sequence

ATGGTGGCAGCGGTGGCGCCGGAGTGGGCCACCAAGGAGCCCTGCCTCATGGGAATCGAC
GAGGCTGGGCGCGGCCCCGTTCTCGGTCCAATGGTGTATGGCTGCATGTACTGCGCTCGT
TCCTACCAAGACACTCTTGCAACCCTTAAATTTGCAGATTCGAAGACCTTGAAGGAAGAA
CAAAGGGAGGAGCTGTTTGAAAGTCTAAAAGACAATAGTTCAATTGGGTGGGAAGTGGAT
GTCATATGCCCAAAGGAGCTATCTGCTAAAATGTTAAAAAGATCGAAAGTTAACCTGAAT
GAAATATCTCATAACTCTGCAATGGGTCTGGTCAAAAGAGCTCTTGACATGGGAGTTCTA
CTAGCAGAGGTCTACATTGATACGGTTGGAGATGCGGAGAAGTACAGGATCAAATTGACT
GAAAAGTTCCCAGGCATCAAATTTGTGGTTGCCAAGAAGGCTGATAGCCTTTTCCCAGTT
GTTAGTGGAGCAAGTATAGTTTCGAAGGTTACCAGAGACAGAGCCTTGAGAAACTGGGTA
TTTGATGAAACGGCTCAGAATATGCACATGAACACTGGGTCTGGTTATCCAGGAGATCCT
TCCACTAAACAATGGTTAGAAGATCACAAACATCCGATATTTGGATTCCCGTCTTTGGTT
CGTTTTAGCTGGGGAACTTGCACGCCCTTCTTCAATGACGCAATTGAAGTTACCTGGGAG
TCCAATGAACTTGAAGAAGATGCAGGTAGCAACGGTAGTGTTAAGAGACAGGTCAAGCTA
TCAAGCTTAGGCTTTACTGGATTCAAAAGGAAGTCTGAGGAGATCGACTCAAGTGGGAAA
GGCCGTTGCAAGTTCTTCCAGGCTCGCAAACTTGAACTTGTCAGGAAGTTTCAGTGA

Peptide Sequence

PEP ID

Os11t0153900-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:2529744:2532592:1 gene:Os11g0153900 transcript:Os11t0153900-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RbH description:Ribonuclease HII/HIII family protein. (Os11t0153900-01)
Sequence

MVAAVAPEWATKEPCLMGIDEAGRGPVLGPMVYGCMYCARSYQDTLATLKFADSKTLKEE
QREELFESLKDNSSIGWEVDVICPKELSAKMLKRSKVNLNEISHNSAMGLVKRALDMGVL
LAEVYIDTVGDAEKYRIKLTEKFPGIKFVVAKKADSLFPVVSGASIVSKVTRDRALRNWV
FDETAQNMHMNTGSGYPGDPSTKQWLEDHKHPIFGFPSLVRFSWGTCTPFFNDAIEVTWE
SNELEEDAGSNGSVKRQVKLSSLGFTGFKRKSEEIDSSGKGRCKFFQARKLELVRKFQ

Transcript Sequence

Transcript ID

Os11t0153900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:2529744:2532592:1 gene:Os11g0153900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RbH description:Ribonuclease HII/HIII family protein. (Os11t0153900-01)
Sequence

CTCGCCCCGCCCCGCCCGCCGCTCTCCTCCGCGCCGCCGCCCGCCGCCGTCTACTCCTCT
CCCGCGCCGCCGGCCGCCGTGTTCCATCCTTTCCCCGGCGCCACAAGCTTCCGGCCCCTA
GATAGCCCGCGAAGCCAAGCTGCCGGCCCCTCGCTCGCCCGCGCAGACGGCCGAGATGGT
GGCAGCGGTGGCGCCGGAGTGGGCCACCAAGGAGCCCTGCCTCATGGGAATCGACGAGGC
TGGGCGCGGCCCCGTTCTCGGTCCAATGGTGTATGGCTGCATGTACTGCGCTCGTTCCTA
CCAAGACACTCTTGCAACCCTTAAATTTGCAGATTCGAAGACCTTGAAGGAAGAACAAAG
GGAGGAGCTGTTTGAAAGTCTAAAAGACAATAGTTCAATTGGGTGGGAAGTGGATGTCAT
ATGCCCAAAGGAGCTATCTGCTAAAATGTTAAAAAGATCGAAAGTTAACCTGAATGAAAT
ATCTCATAACTCTGCAATGGGTCTGGTCAAAAGAGCTCTTGACATGGGAGTTCTACTAGC
AGAGGTCTACATTGATACGGTTGGAGATGCGGAGAAGTACAGGATCAAATTGACTGAAAA
GTTCCCAGGCATCAAATTTGTGGTTGCCAAGAAGGCTGATAGCCTTTTCCCAGTTGTTAG
TGGAGCAAGTATAGTTTCGAAGGTTACCAGAGACAGAGCCTTGAGAAACTGGGTATTTGA
TGAAACGGCTCAGAATATGCACATGAACACTGGGTCTGGTTATCCAGGAGATCCTTCCAC
TAAACAATGGTTAGAAGATCACAAACATCCGATATTTGGATTCCCGTCTTTGGTTCGTTT
TAGCTGGGGAACTTGCACGCCCTTCTTCAATGACGCAATTGAAGTTACCTGGGAGTCCAA
TGAACTTGAAGAAGATGCAGGTAGCAACGGTAGTGTTAAGAGACAGGTCAAGCTATCAAG
CTTAGGCTTTACTGGATTCAAAAGGAAGTCTGAGGAGATCGACTCAAGTGGGAAAGGCCG
TTGCAAGTTCTTCCAGGCTCGCAAACTTGAACTTGTCAGGAAGTTTCAGTGATGCGTATC
AGCTTCGTTGTCTGTACTACTAACTTTAAGTCAGAGTAGAAGGCTCTTATGGGGTTATGG
CTTGTATTTCAGCTGTGACACTTGTGAGTTCAGTATAATGAAGGCTCTTATGGTGATATT
GTATTTCAGCTATG