Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0147000-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:2131922:2141236:-1 gene:Os11g0147000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Long chain acyl-CoA synthetase 6 (EC 6.2.1.3). (Os11t0147000-01)
Sequence

ATGCGAGGCAACGGCAGGGGGCGGGAGGAGGAGGGGAACTCCCCAATGGGCCGCCGGTTG
CGGGCCGTCTCGGCCCACCTCCTGCCGCCGGCGTCCACCACCACCACCACCGGCGGCGTT
GACCTCGCCGCCAACCCCACCGCCGGCGAGTACGCGCACGTGCAGGGCTACAGTGCTGTG
CTCCCTGAGAAGTTGCAGACCGGGAAGTGGAATGTATACCGGAATGCGAAGACACCTCTT
AGGTTAATAGATAGATTCCCTGATACCCCTGATATTGCAACGCTTCATGATAATTTCGTG
TATGCAGTTGAGACCTTTAGGGACTGTAGATACCTGGGCACAAGAATCTGCGCTGATGGA
ACAGTTGGGGACTACAAATGGATGACATATGGAGAAGCTAGTACAAACAGGACTGCAATA
GGTTCTGGTCTTATTTATCATGGAATACCTGAAGGTGCATGCATTGGTTTGTATTTTATA
AACAGACCTGAGTGGATCATAGTTGATCATGCCTGTGCAGCATATTCATTCGTGTCTGTG
CCACTTTATGACACTCTTGGTCCAGATGCAGTTCAGTTCATTGTCAACCATGCGACAGTA
GAAGCTATTTTCTGTGTGCCTCAAACACTAAGCACTCTGTTAAGCTTTATAACTCAAATG
CCATGTGTTCGCCTTATAGTGGTAATTGGTGGAGACAATGCAAATATGCCATCTACCCCA
ACATCTACTGGAGTGGAAATTATAATTTACTCCAGACTACTCAACCAGGGAAAGATGAGT
TCTAGACCTTTTCGTCCTCCAAAACCTGAAGATGTTGCCACTATTTGTTACACTAGTGGC
ACAACCGGCACACCAAAGGGAGTTGTTCTTTCTCATAGGAACTTAATCGCAAATGTAGCA
GGATCAAGTGTGGTCATTAAGTTTTACCCATCTGATGTGTACATCTCATATCTACCTTTA
GCTCACATCTATGAGAGAGTTAACCAGATTGCACTGCTTCACTATGGAGTTGCCATTGGA
TTCTACCAAGGGGATAATTTGAAGCTGATGGATGATCTGGCTGCACTGAGACCAACAGTA
TTTTCTAGCGTACCCCGGCTATATAACAGAATTTATGCTGCAATTACAAATGCTGTGAAG
GAGTCTGGAGGGTTGAAAGAAAGATTTTTTCATGCTGCATACAATGCTAAGAGGCAAGCC
ATTATGAATGGACGAAATCTGTCCCCAATGTGGGACAAATTGGTATTTAACAAAATAAAA
GCTAGGCTTGGTGGACGTGTGAGGCTTATGTCTTCAGGTGCTTCTCCATTGTCAGCAGAT
GTCATGGAATTCCTAAGAGTATGCTTCGGTTGTCTCGTAATTGAAGGATATGGAATGACA
GAGACATCCTGTGTCATCGCTACAATGGATTGTGATGATAGGTTAATTGGTCATGTTGGA
CCTCCAAATCCATCTTGTGAGATTAAGCTAGTGGATGTCCCAGAAATGAATTACACCTCT
GAGGATCAACCATATCCTCGTGGAGAAATTTGTGTTAGGGGAACTACGATATTTTTTGGT
TACTATAAGGATGAAATCCAAACGAGAGAGGTCATTGATGAGGACGGTTGGTTGCACACT
GGAGACATAGGTTTGTGGCTGCCTGGAGGGCGTTTAAAAATTATAGATAGGAAAAAGAAC
ATTTTCAAGTTAGCTCAAGGAGAATACATAGCTCCCGAGAAGATTGAGAATGTCTATGCT
AAGTGCAAGTTTATTGCGCAGTGCTTTATATATGGTGATAGTTTAAACTCTTCTTTGGTT
GCCGTAGTAGCAGTTGAACCAGAGGTGTTGAAGGCTTGGGCTGCATCGGAAGGAATCCAG
TACGAGGATTTAAGACAGCTATGCGCTGATACAAGGGCAAGAGCTGCTGTCCTGGCTGAC
ATGGACTCTATTGGAAAGGAGGCACAGCTAAGAGGTTTTGAATTTGCCAAAGCTGTTACC
CTTGTTGCTGAGCCTTTCACACTAGAAAATGGTCTCCTCACCCCAACATTCAAGATCAAA
AGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATGTACGCACAACTGCGT
GAAGCAGAATCAACAAAGTCCAAGTTGTAA

Peptide Sequence

PEP ID

Os11t0147000-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:2131922:2141236:-1 gene:Os11g0147000 transcript:Os11t0147000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Long chain acyl-CoA synthetase 6 (EC 6.2.1.3). (Os11t0147000-01)
Sequence

MRGNGRGREEEGNSPMGRRLRAVSAHLLPPASTTTTTGGVDLAANPTAGEYAHVQGYSAV
LPEKLQTGKWNVYRNAKTPLRLIDRFPDTPDIATLHDNFVYAVETFRDCRYLGTRICADG
TVGDYKWMTYGEASTNRTAIGSGLIYHGIPEGACIGLYFINRPEWIIVDHACAAYSFVSV
PLYDTLGPDAVQFIVNHATVEAIFCVPQTLSTLLSFITQMPCVRLIVVIGGDNANMPSTP
TSTGVEIIIYSRLLNQGKMSSRPFRPPKPEDVATICYTSGTTGTPKGVVLSHRNLIANVA
GSSVVIKFYPSDVYISYLPLAHIYERVNQIALLHYGVAIGFYQGDNLKLMDDLAALRPTV
FSSVPRLYNRIYAAITNAVKESGGLKERFFHAAYNAKRQAIMNGRNLSPMWDKLVFNKIK
ARLGGRVRLMSSGASPLSADVMEFLRVCFGCLVIEGYGMTETSCVIATMDCDDRLIGHVG
PPNPSCEIKLVDVPEMNYTSEDQPYPRGEICVRGTTIFFGYYKDEIQTREVIDEDGWLHT
GDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFIAQCFIYGDSLNSSLV
AVVAVEPEVLKAWAASEGIQYEDLRQLCADTRARAAVLADMDSIGKEAQLRGFEFAKAVT
LVAEPFTLENGLLTPTFKIKRPQAKAYFAKEIADMYAQLREAESTKSKL

Transcript Sequence

Transcript ID

Os11t0147000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:2131922:2141236:-1 gene:Os11g0147000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Long chain acyl-CoA synthetase 6 (EC 6.2.1.3). (Os11t0147000-01)
Sequence

ACGAGTGACGACGAGTAGTCCTCCACCCCTACGCCTCGCCTTCTCCTCTCTTCTTTTCCC
ACGCAAACGCCGGAGACAGAGGAGGAGACAAGAGTCCAAGACCAATGCGAGGCAACGGCA
GGGGGCGGGAGGAGGAGGGGAACTCCCCAATGGGCCGCCGGTTGCGGGCCGTCTCGGCCC
ACCTCCTGCCGCCGGCGTCCACCACCACCACCACCGGCGGCGTTGACCTCGCCGCCAACC
CCACCGCCGGCGAGTACGCGCACGTGCAGGGCTACAGTGCTGTGCTCCCTGAGAAGTTGC
AGACCGGGAAGTGGAATGTATACCGGAATGCGAAGACACCTCTTAGGTTAATAGATAGAT
TCCCTGATACCCCTGATATTGCAACGCTTCATGATAATTTCGTGTATGCAGTTGAGACCT
TTAGGGACTGTAGATACCTGGGCACAAGAATCTGCGCTGATGGAACAGTTGGGGACTACA
AATGGATGACATATGGAGAAGCTAGTACAAACAGGACTGCAATAGGTTCTGGTCTTATTT
ATCATGGAATACCTGAAGGTGCATGCATTGGTTTGTATTTTATAAACAGACCTGAGTGGA
TCATAGTTGATCATGCCTGTGCAGCATATTCATTCGTGTCTGTGCCACTTTATGACACTC
TTGGTCCAGATGCAGTTCAGTTCATTGTCAACCATGCGACAGTAGAAGCTATTTTCTGTG
TGCCTCAAACACTAAGCACTCTGTTAAGCTTTATAACTCAAATGCCATGTGTTCGCCTTA
TAGTGGTAATTGGTGGAGACAATGCAAATATGCCATCTACCCCAACATCTACTGGAGTGG
AAATTATAATTTACTCCAGACTACTCAACCAGGGAAAGATGAGTTCTAGACCTTTTCGTC
CTCCAAAACCTGAAGATGTTGCCACTATTTGTTACACTAGTGGCACAACCGGCACACCAA
AGGGAGTTGTTCTTTCTCATAGGAACTTAATCGCAAATGTAGCAGGATCAAGTGTGGTCA
TTAAGTTTTACCCATCTGATGTGTACATCTCATATCTACCTTTAGCTCACATCTATGAGA
GAGTTAACCAGATTGCACTGCTTCACTATGGAGTTGCCATTGGATTCTACCAAGGGGATA
ATTTGAAGCTGATGGATGATCTGGCTGCACTGAGACCAACAGTATTTTCTAGCGTACCCC
GGCTATATAACAGAATTTATGCTGCAATTACAAATGCTGTGAAGGAGTCTGGAGGGTTGA
AAGAAAGATTTTTTCATGCTGCATACAATGCTAAGAGGCAAGCCATTATGAATGGACGAA
ATCTGTCCCCAATGTGGGACAAATTGGTATTTAACAAAATAAAAGCTAGGCTTGGTGGAC
GTGTGAGGCTTATGTCTTCAGGTGCTTCTCCATTGTCAGCAGATGTCATGGAATTCCTAA
GAGTATGCTTCGGTTGTCTCGTAATTGAAGGATATGGAATGACAGAGACATCCTGTGTCA
TCGCTACAATGGATTGTGATGATAGGTTAATTGGTCATGTTGGACCTCCAAATCCATCTT
GTGAGATTAAGCTAGTGGATGTCCCAGAAATGAATTACACCTCTGAGGATCAACCATATC
CTCGTGGAGAAATTTGTGTTAGGGGAACTACGATATTTTTTGGTTACTATAAGGATGAAA
TCCAAACGAGAGAGGTCATTGATGAGGACGGTTGGTTGCACACTGGAGACATAGGTTTGT
GGCTGCCTGGAGGGCGTTTAAAAATTATAGATAGGAAAAAGAACATTTTCAAGTTAGCTC
AAGGAGAATACATAGCTCCCGAGAAGATTGAGAATGTCTATGCTAAGTGCAAGTTTATTG
CGCAGTGCTTTATATATGGTGATAGTTTAAACTCTTCTTTGGTTGCCGTAGTAGCAGTTG
AACCAGAGGTGTTGAAGGCTTGGGCTGCATCGGAAGGAATCCAGTACGAGGATTTAAGAC
AGCTATGCGCTGATACAAGGGCAAGAGCTGCTGTCCTGGCTGACATGGACTCTATTGGAA
AGGAGGCACAGCTAAGAGGTTTTGAATTTGCCAAAGCTGTTACCCTTGTTGCTGAGCCTT
TCACACTAGAAAATGGTCTCCTCACCCCAACATTCAAGATCAAAAGACCGCAAGCTAAGG
CATACTTTGCAAAAGAAATCGCAGATATGTACGCACAACTGCGTGAAGCAGAATCAACAA
AGTCCAAGTTGTAATTACCCGAGTAACAAACAGAATAAAGGTTCAACCAACACAGGAGAT
TTAGTTCGCCAATTGTATATTCAACAGGATGAAATAAGCGCCTTCTATTTACTGGCCAAG
CAAACAATGACAGCAGTATTTCACGAGCCCTTCCATCTGACGACGAAATGAAACTTCACC
GATCAACAGCAGGGAACAGTTGGATGTAGAGGCCGGTTTCTTAATCCATTATCTAAAAAA
CAGCAGGGAACAGTGCTTGATGCATAATTCATATTTGTTTCTTATTTGAGTGAAGTAATA
CTACTGTTTAGTGGGATATGGACTACTCATTTGTTTGGGACAGTATTTGGTGCGGAATTA
ATATTTGTTTGTTGCTAGC