Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0143500-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:2019766:2024207:-1 gene:Os11g0143500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GLDH1 description:Similar to L-Galactono-1,4-lactone dehydrogenase. (Os11t0143500-01)
Sequence

ATGCGGCGCCTCCTCCTCGCCGGCATCCTCCGCCGCGCCTCCTCCTCCCCTTCCTCCCAC
CACCACCTCCACCTTGTCAGGGCGCTCTCCGCCTCGTCCCCGCTCCCGGCCTCCGACGCC
GACCTCCGCAAGTACGCCGGCTACGCGCTCCTCCTCCTCGGCTGCGGCGCCGCCACCTAC
TACTCCTTCCCGCTTCCCCCCGACGCGCTCCACAAGAAGGCCGTCCCCTTCAAGTACGCG
CCGCTCCCCGACGACCTCCACGCCGTCTCCAACTGGAGCGCCACCCACGAGGTCCACACC
CGCGTCCTCCTCCAGCCCGACTCCCTCCCCGCCCTCCACGACGCGCTCGCCGCCGCCCAC
GGCGAGTGCCGCAAGCTCAGGCCCCTCGGCTCGGGCCTGTCCCCCAATGGCCTCGCGCTC
TCCCGCGCCGGCATGGTCAACCTCGCGCTCATGGACAAGGTGCTCGGCGTCGACGCCAAG
AAGAAGACCGTCACCGTGCAGGCCGGGATACGCGTCGCCGAGCTTGTCGACGCGCTCCGG
GAGCATGGTCTCACGCTGCAGAACTTCGCGTCCATTCGGGAGCAGCAGGTCGGCGGCATC
ATTCAGGTTGGTGCCCATGGCACTGGTGCAAGATTGCCACCAATTGATGAACAAGTTATT
AGCATGAAATTGGTTACCCCTGCCAAGGGGACAATAGAGTTGTCAAGGGAGAAGGATCCT
GATTTATTCTATCTTGCTCGCTGTGGACTTGGTGGCCTTGGAGTTGTAGCAGAAGTTACT
CTTCAATGTGTGGAAAGACACCAACTTATTGAACACACTTTCGTTTCCAATGCAGACGAA
GTCAAGAAAAATCACAAGAAATGGCTCTCTGAAAATAAACATATTAAGTACTTATGGATT
CCATACACCGATACAGTTGTTGTTGTCCAATGCAATCCTCCTTCAAGGTGGAGAACTCCA
AAGTTTACCTCAAAATATGGAAAGGATGAGGCTATACAACATGTTCGTGATCTTTATCAT
GAGTCATTGAAGAAATATAGAACTAAAGCAGAAAGTAATGACCCAGAAGTAGATCAGCTT
TCATTCACTGAATTGAGGGATCGGTTGCTTACCCTGGATCCTCTAGACAAAGATCATGTG
ATCAGAATTAACAAAGCAGAAGCTGAATATTGGAAGAAGTCAGAGGGTTATCGCATGGGC
TGGAGTGACGAAATATTAGGCTTTGATTGTGGTGGGCAGCAGTGGGTTTCTGAAACTTGC
TTCCCTGCAGGGACCCTAGCAAAGCCTAATATGAAGGATCTGGATTATATAGAGGAGCTG
CTGCAGTTGATTGAGAAGGAAGATATACCCGCACCGGCACCTATTGAGCAGCGTTGGACT
GCCTGCAGCAGGAGTCCCATGAGCCCAGCATCAAGCTCTCAAGAAGATGACATATTTTCA
TGGGTTGGGATAATAATGTACCTCCCAACGTCGGATGCTCGCCAAAGGAAGGAAATTACA
GAGGAATTTTTTAATTACAGAAGTAAGACGCAAACAAATCTATGGGATGGTTATTCTGCA
TATGAACACTGGGCCAAAATTGAGGTTCCTAAGGATAAGGATGAACTCGCTGAACTCCAG
GCTAGGTTGAGGAAACGTTTCCCAGTAGATGCATATAACAAAGCACGCATGGAGCTTGAC
CCTAACAAGGTTCTTTCCAATGCAAAGTTAGAGAAGCTCTTCCCAGTAACAGAGGTCCAA
CATGAAAAGTAA

Peptide Sequence

PEP ID

Os11t0143500-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:2019766:2024207:-1 gene:Os11g0143500 transcript:Os11t0143500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GLDH1 description:Similar to L-Galactono-1,4-lactone dehydrogenase. (Os11t0143500-01)
Sequence

MRRLLLAGILRRASSSPSSHHHLHLVRALSASSPLPASDADLRKYAGYALLLLGCGAATY
YSFPLPPDALHKKAVPFKYAPLPDDLHAVSNWSATHEVHTRVLLQPDSLPALHDALAAAH
GECRKLRPLGSGLSPNGLALSRAGMVNLALMDKVLGVDAKKKTVTVQAGIRVAELVDALR
EHGLTLQNFASIREQQVGGIIQVGAHGTGARLPPIDEQVISMKLVTPAKGTIELSREKDP
DLFYLARCGLGGLGVVAEVTLQCVERHQLIEHTFVSNADEVKKNHKKWLSENKHIKYLWI
PYTDTVVVVQCNPPSRWRTPKFTSKYGKDEAIQHVRDLYHESLKKYRTKAESNDPEVDQL
SFTELRDRLLTLDPLDKDHVIRINKAEAEYWKKSEGYRMGWSDEILGFDCGGQQWVSETC
FPAGTLAKPNMKDLDYIEELLQLIEKEDIPAPAPIEQRWTACSRSPMSPASSSQEDDIFS
WVGIIMYLPTSDARQRKEITEEFFNYRSKTQTNLWDGYSAYEHWAKIEVPKDKDELAELQ
ARLRKRFPVDAYNKARMELDPNKVLSNAKLEKLFPVTEVQHEK

Transcript Sequence

Transcript ID

Os11t0143500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:2019766:2024207:-1 gene:Os11g0143500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GLDH1 description:Similar to L-Galactono-1,4-lactone dehydrogenase. (Os11t0143500-01)
Sequence

CGGTGGCTGCATTTCGTCCCTGTTCTGCCGCCGACGAGCGACGATGCGGCGCCTCCTCCT
CGCCGGCATCCTCCGCCGCGCCTCCTCCTCCCCTTCCTCCCACCACCACCTCCACCTTGT
CAGGGCGCTCTCCGCCTCGTCCCCGCTCCCGGCCTCCGACGCCGACCTCCGCAAGTACGC
CGGCTACGCGCTCCTCCTCCTCGGCTGCGGCGCCGCCACCTACTACTCCTTCCCGCTTCC
CCCCGACGCGCTCCACAAGAAGGCCGTCCCCTTCAAGTACGCGCCGCTCCCCGACGACCT
CCACGCCGTCTCCAACTGGAGCGCCACCCACGAGGTCCACACCCGCGTCCTCCTCCAGCC
CGACTCCCTCCCCGCCCTCCACGACGCGCTCGCCGCCGCCCACGGCGAGTGCCGCAAGCT
CAGGCCCCTCGGCTCGGGCCTGTCCCCCAATGGCCTCGCGCTCTCCCGCGCCGGCATGGT
CAACCTCGCGCTCATGGACAAGGTGCTCGGCGTCGACGCCAAGAAGAAGACCGTCACCGT
GCAGGCCGGGATACGCGTCGCCGAGCTTGTCGACGCGCTCCGGGAGCATGGTCTCACGCT
GCAGAACTTCGCGTCCATTCGGGAGCAGCAGGTCGGCGGCATCATTCAGGTTGGTGCCCA
TGGCACTGGTGCAAGATTGCCACCAATTGATGAACAAGTTATTAGCATGAAATTGGTTAC
CCCTGCCAAGGGGACAATAGAGTTGTCAAGGGAGAAGGATCCTGATTTATTCTATCTTGC
TCGCTGTGGACTTGGTGGCCTTGGAGTTGTAGCAGAAGTTACTCTTCAATGTGTGGAAAG
ACACCAACTTATTGAACACACTTTCGTTTCCAATGCAGACGAAGTCAAGAAAAATCACAA
GAAATGGCTCTCTGAAAATAAACATATTAAGTACTTATGGATTCCATACACCGATACAGT
TGTTGTTGTCCAATGCAATCCTCCTTCAAGGTGGAGAACTCCAAAGTTTACCTCAAAATA
TGGAAAGGATGAGGCTATACAACATGTTCGTGATCTTTATCATGAGTCATTGAAGAAATA
TAGAACTAAAGCAGAAAGTAATGACCCAGAAGTAGATCAGCTTTCATTCACTGAATTGAG
GGATCGGTTGCTTACCCTGGATCCTCTAGACAAAGATCATGTGATCAGAATTAACAAAGC
AGAAGCTGAATATTGGAAGAAGTCAGAGGGTTATCGCATGGGCTGGAGTGACGAAATATT
AGGCTTTGATTGTGGTGGGCAGCAGTGGGTTTCTGAAACTTGCTTCCCTGCAGGGACCCT
AGCAAAGCCTAATATGAAGGATCTGGATTATATAGAGGAGCTGCTGCAGTTGATTGAGAA
GGAAGATATACCCGCACCGGCACCTATTGAGCAGCGTTGGACTGCCTGCAGCAGGAGTCC
CATGAGCCCAGCATCAAGCTCTCAAGAAGATGACATATTTTCATGGGTTGGGATAATAAT
GTACCTCCCAACGTCGGATGCTCGCCAAAGGAAGGAAATTACAGAGGAATTTTTTAATTA
CAGAAGTAAGACGCAAACAAATCTATGGGATGGTTATTCTGCATATGAACACTGGGCCAA
AATTGAGGTTCCTAAGGATAAGGATGAACTCGCTGAACTCCAGGCTAGGTTGAGGAAACG
TTTCCCAGTAGATGCATATAACAAAGCACGCATGGAGCTTGACCCTAACAAGGTTCTTTC
CAATGCAAAGTTAGAGAAGCTCTTCCCAGTAACAGAGGTCCAACATGAAAAGTAAGGTTG
TGCTGATTGTTGACATGTTTGAAGACATGTCGGGGATACTTAAATCAATAGCCAAAACTA
CAATTCTGGTGGTTTCTCGTTACATAACCGGATATGAAGAGTTAAATTCTTTGTAGAACG
TGGTCTGTTGCTGGAGAAGGGTTTTAGTGCTCCTCCTCTTGGATCAGTGCTTAGTACTGA
ACTGACGCGTTTGTTGCTGGAGGCTTTTATACTTGGGAACATCCATGCCTATTATGAGAC
TAAATGGTCTGTTTTATCAAGAGAAATGGCATGTAACCTTTTGCAGCAGAAATAAAGTGC
GTGAAATAACAATTTGATGCGCTTCAAGAAATTAAAGATTTGGCCAGTC