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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0137200-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:1714986:1718589:1 gene:Os11g0137200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hydroxymethylglutaryl-CoA lyase. (Os11t0137200-01)
Sequence

ATGTCGAGCCTCGAGGAGCCGCTCGGTCTTGGGGACCTTCCAAAGTTGAGTATTAACAGA
CTTGAAAGGTTCTCTCCAAATGCTTGCAGAGCAAGTGCTGATGACCGTAGCACCAGCAAT
TACAAGCATCACAATGGTGGCAACAATCAGACGATCTTTCACAGCAGTTCTCATTCATGG
CATATGCAAGGCCAATATACTGATTCCTCCTGCAATGGAGTGGATATGGAGTTCAGAGCT
CTTCCACGGAAGGTTTTGTGGGAGCTTCCAAGGTTTGTGAAGATAGTTGAAGTCGGACCA
CGGGATGGTCTGCAAAATGAGAAGAGTACTGTACCAGCTTCTGTAAAGATTGAACTGATA
CACAAATTGGTGGCTTCTGGTCTATCAGTAGTTGAAGCCACAAGTTTTGTTTCCCCAAAA
TGGGTGCCGCAGCTAGCTGATGCAAAGGATGTCCTTCAAGGGATTAGGCATGTGCCAGAT
GTGCGGTTTCCTGTGTTAACTCCTAACCTCAGAGGATTTGAGGCTGCTCTTGCAGCTGGT
GCAAAAGAAGTTGCAGTCTTCGCATCTGCCTCTGAATCCTTTTCTAAGTCAAACCTTAAT
TGTACCATCAAGGAAAGCCTTGTTCGGTACCGTGATGTTGTAACTTCTGCCAAGAAACAT
GGAATGCGAATCCGTGGGTATGTTTCATGTGTGGTTGGTTGCCCTGTTGAAGGCACAATT
CATCCATCAAAGGTAGCATACGTAGCTAAGGAGCTTTATGACATGGGTTGCTCGGAGATT
TCACTTGGAGACACGATTGGTGTTGGTACACCAGGTAGCATACTTGCTATGCTTGAAGCT
GTAATGTCTTTTGTTCCAGTGGACAAGCTCGCCGTCCATTTTCATGACACATACGGCCAA
GCCCTTGCCAACATACTGGTCTCTCTCCAACTGGGGATCAACATAGTGGACTCATCAGTG
TCAGGACTGGGAGGCTGCCCATATGCAAAGGGCGCCACCGGCAATGTCGCGACGGAGGAC
GTTGTGTACATGCTCCATGGACTGGGGATAGAGACCAATGTTGACCTCAACAAGCTCATG
GATGCTGGAGATTACATCTCCAAGCATCTGGGAAGGCAGTCAGGCTCCAAGACCACCACT
GCTCTCCGCAAGCTAACCACTTAA

Peptide Sequence

PEP ID

Os11t0137200-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:1714986:1718589:1 gene:Os11g0137200 transcript:Os11t0137200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hydroxymethylglutaryl-CoA lyase. (Os11t0137200-01)
Sequence

MSSLEEPLGLGDLPKLSINRLERFSPNACRASADDRSTSNYKHHNGGNNQTIFHSSSHSW
HMQGQYTDSSCNGVDMEFRALPRKVLWELPRFVKIVEVGPRDGLQNEKSTVPASVKIELI
HKLVASGLSVVEATSFVSPKWVPQLADAKDVLQGIRHVPDVRFPVLTPNLRGFEAALAAG
AKEVAVFASASESFSKSNLNCTIKESLVRYRDVVTSAKKHGMRIRGYVSCVVGCPVEGTI
HPSKVAYVAKELYDMGCSEISLGDTIGVGTPGSILAMLEAVMSFVPVDKLAVHFHDTYGQ
ALANILVSLQLGINIVDSSVSGLGGCPYAKGATGNVATEDVVYMLHGLGIETNVDLNKLM
DAGDYISKHLGRQSGSKTTTALRKLTT

Transcript Sequence

Transcript ID

Os11t0137200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:1714986:1718589:1 gene:Os11g0137200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hydroxymethylglutaryl-CoA lyase. (Os11t0137200-01)
Sequence

CGTTCCTTTCCCTTGGCGGAGACGCGGAGGCGCAGCCGCGACCTCCATTTTCGGACTCCG
GTGCTCTCTCCTCCTTTGCGTCGGATTCAAGTAAGGCTTGTTGAGTTCGGTGCCCTATAT
CACTCACTCAATCCTGGGTGCGATTTGATCGGGTTGGCTTCCAATTTGTCGATCGATCGA
GAATGTCGAGCCTCGAGGAGCCGCTCGGTCTTGGGGACCTTCCAAAGTTGAGTATTAACA
GACTTGAAAGGTTCTCTCCAAATGCTTGCAGAGCAAGTGCTGATGACCGTAGCACCAGCA
ATTACAAGCATCACAATGGTGGCAACAATCAGACGATCTTTCACAGCAGTTCTCATTCAT
GGCATATGCAAGGCCAATATACTGATTCCTCCTGCAATGGAGTGGATATGGAGTTCAGAG
CTCTTCCACGGAAGGTTTTGTGGGAGCTTCCAAGGTTTGTGAAGATAGTTGAAGTCGGAC
CACGGGATGGTCTGCAAAATGAGAAGAGTACTGTACCAGCTTCTGTAAAGATTGAACTGA
TACACAAATTGGTGGCTTCTGGTCTATCAGTAGTTGAAGCCACAAGTTTTGTTTCCCCAA
AATGGGTGCCGCAGCTAGCTGATGCAAAGGATGTCCTTCAAGGGATTAGGCATGTGCCAG
ATGTGCGGTTTCCTGTGTTAACTCCTAACCTCAGAGGATTTGAGGCTGCTCTTGCAGCTG
GTGCAAAAGAAGTTGCAGTCTTCGCATCTGCCTCTGAATCCTTTTCTAAGTCAAACCTTA
ATTGTACCATCAAGGAAAGCCTTGTTCGGTACCGTGATGTTGTAACTTCTGCCAAGAAAC
ATGGAATGCGAATCCGTGGGTATGTTTCATGTGTGGTTGGTTGCCCTGTTGAAGGCACAA
TTCATCCATCAAAGGTAGCATACGTAGCTAAGGAGCTTTATGACATGGGTTGCTCGGAGA
TTTCACTTGGAGACACGATTGGTGTTGGTACACCAGGTAGCATACTTGCTATGCTTGAAG
CTGTAATGTCTTTTGTTCCAGTGGACAAGCTCGCCGTCCATTTTCATGACACATACGGCC
AAGCCCTTGCCAACATACTGGTCTCTCTCCAACTGGGGATCAACATAGTGGACTCATCAG
TGTCAGGACTGGGAGGCTGCCCATATGCAAAGGGCGCCACCGGCAATGTCGCGACGGAGG
ACGTTGTGTACATGCTCCATGGACTGGGGATAGAGACCAATGTTGACCTCAACAAGCTCA
TGGATGCTGGAGATTACATCTCCAAGCATCTGGGAAGGCAGTCAGGCTCCAAGACCACCA
CTGCTCTCCGCAAGCTAACCACTTAAGTCCCTGATGATCATAATAGGGATTCAGAAAAGA
AGACCGAAGATACATCGGTTGGCGTCAGTTTAATGTTTTTACACAAATCATATGTGATTG
TAACTTGTAAACCGTCTCAATTTAGTCCCAATATGGGTGAAAGTAAACAGAAACCATATA
TGTATACACACATTTGTGTTTAATTTCTTGGATTGAATAATCAATGCCCTTCATAC