Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0133800-00
CDS Infomation

cds chromosome:IRGSP-1.0:11:1562115:1565026:1 gene:Os11g0133800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to zinc finger (DHHC type) family protein. (Os11t0133800-00)
Sequence

ATGATCATGGCGTCATCACAGGAGTTCGAGGCTAATGACCCACAGCAGCTGCACGCCAAG
CCCAAGAGGCTCTACCAAGTCTGGAAGGGAAACAACATATTCTTGTGTGGTGGACGCCTT
ATTATTGGCCCGGATGCAGCCTCCCTGCTGTTGTCCATGTTCCTCATCCTTGGCCCGGCC
ATCGTCTTCAGCTACCAGATGGAGTCCACAATCCACCGCTCTCAACAACGGATGCGTCGA
GCTGCACAGCTGATAGTCATCATCACAACAGCAGCGGACCTTTTCTTCCTATTCATGACA
TCAGCCAGGGACCCAGGGATAGTGCCAAGGAACACAAGAGCACCACCTGAAGCCGATGAA
TTTCTTGGCTCAACCACACCATCGATGGAGTGGAGCTCAGGGAGAACTCCACGGATGAGG
TTCCGTAGGGCAAAGGATGTTACAGTCAATGGCTTCACGGTGAAGGTGAAGTTTTGCGAG
ACCTGCCTAAGGTACCGCCCACCGCGATCCTCACATTGCTCCATCTGCAACAACTGCGTT
GAAAAGTTTGATCACCACTGCCCATGGGTCGGCCAGTGCATTGGACTTAGGAACTACCGC
TACTTCTTTCTGTTTGTAGCGACATCAACTTTCCTGTGTATAATTGTTTTCATCTTTTCA
TGGGTGAATGTCTACTATGAAAGGGGAGACGATGGCGGATCCATCTGGAAGGCTTTGCGA
AAGGAAACATACTCATTTGTGCTAATCATATATACTTTTATTGTTGTATGGTTTGTTGGT
GGTCTCACAGTATTTCATCTTTATCTGATCAGTACTAATCAGACAACATATGAAAACTTC
AGATACCACTACAACAAGAAGGACAACCCCTACCGAAAGAGCGTTGCAGCAAACTTTGTA
GAAGTGTTCTTCACCAAGATCCCTCCACCACAGAACAATTTCTGTTCATGGGTAGGTGAG
GGCGCACTGGAAGCTGGATTTTATACTCCATATATTGCGCTGGATTTGACTGATCCAAGG
GAAAAGATTGATTTAGAGATGGGAAACAAGGATATACTCGTGGGGGGTATGCAGATCCCA
ACAGTGCTTCAGAACATAGACTATGGTTCCTTTGAAGATAATCCAGATGACAAGAACAGG
AATGAAGATGATAGACTAGTGCCTTTTGCTTCAACTTGGGTACAACAAGCAAATGAAGGT
GCTCGAACATCTGAAATAGCTACTGTAGAATATAAGGACGAAATAAGTGAAGATGGTGGT
AAGGAAATTATTAGTTCAAACACAAGTTCAGAACAAACATCAATAGAAGCTAATGCAGCA
GCATCTGAGGATGAAAGCAATGAGGGCATTGCTGGAAAAAGTAACAGTTCAGATAGAAGT
TCTACCCAAAATTTGGGGGATGTGAACTAA

Peptide Sequence

PEP ID

Os11t0133800-00
PEP Infomation

pep chromosome:IRGSP-1.0:11:1562115:1565026:1 gene:Os11g0133800 transcript:Os11t0133800-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to zinc finger (DHHC type) family protein. (Os11t0133800-00)
Sequence

MIMASSQEFEANDPQQLHAKPKRLYQVWKGNNIFLCGGRLIIGPDAASLLLSMFLILGPA
IVFSYQMESTIHRSQQRMRRAAQLIVIITTAADLFFLFMTSARDPGIVPRNTRAPPEADE
FLGSTTPSMEWSSGRTPRMRFRRAKDVTVNGFTVKVKFCETCLRYRPPRSSHCSICNNCV
EKFDHHCPWVGQCIGLRNYRYFFLFVATSTFLCIIVFIFSWVNVYYERGDDGGSIWKALR
KETYSFVLIIYTFIVVWFVGGLTVFHLYLISTNQTTYENFRYHYNKKDNPYRKSVAANFV
EVFFTKIPPPQNNFCSWVGEGALEAGFYTPYIALDLTDPREKIDLEMGNKDILVGGMQIP
TVLQNIDYGSFEDNPDDKNRNEDDRLVPFASTWVQQANEGARTSEIATVEYKDEISEDGG
KEIISSNTSSEQTSIEANAAASEDESNEGIAGKSNSSDRSSTQNLGDVN

Transcript Sequence

Transcript ID

Os11t0133800-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:1562115:1565026:1 gene:Os11g0133800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to zinc finger (DHHC type) family protein. (Os11t0133800-00)
Sequence

CTCGTCGATCAAAGCTAAGCACAGGCACATAACACCCTCAATGCAACCAGCAGCAGCGAG
GAGGCCATGCTGCCATGAATCATGATCATGGCGTCATCACAGGAGTTCGAGGCTAATGAC
CCACAGCAGCTGCACGCCAAGCCCAAGAGGCTCTACCAAGTCTGGAAGGGAAACAACATA
TTCTTGTGTGGTGGACGCCTTATTATTGGCCCGGATGCAGCCTCCCTGCTGTTGTCCATG
TTCCTCATCCTTGGCCCGGCCATCGTCTTCAGCTACCAGATGGAGTCCACAATCCACCGC
TCTCAACAACGGATGCGTCGAGCTGCACAGCTGATAGTCATCATCACAACAGCAGCGGAC
CTTTTCTTCCTATTCATGACATCAGCCAGGGACCCAGGGATAGTGCCAAGGAACACAAGA
GCACCACCTGAAGCCGATGAATTTCTTGGCTCAACCACACCATCGATGGAGTGGAGCTCA
GGGAGAACTCCACGGATGAGGTTCCGTAGGGCAAAGGATGTTACAGTCAATGGCTTCACG
GTGAAGGTGAAGTTTTGCGAGACCTGCCTAAGGTACCGCCCACCGCGATCCTCACATTGC
TCCATCTGCAACAACTGCGTTGAAAAGTTTGATCACCACTGCCCATGGGTCGGCCAGTGC
ATTGGACTTAGGAACTACCGCTACTTCTTTCTGTTTGTAGCGACATCAACTTTCCTGTGT
ATAATTGTTTTCATCTTTTCATGGGTGAATGTCTACTATGAAAGGGGAGACGATGGCGGA
TCCATCTGGAAGGCTTTGCGAAAGGAAACATACTCATTTGTGCTAATCATATATACTTTT
ATTGTTGTATGGTTTGTTGGTGGTCTCACAGTATTTCATCTTTATCTGATCAGTACTAAT
CAGACAACATATGAAAACTTCAGATACCACTACAACAAGAAGGACAACCCCTACCGAAAG
AGCGTTGCAGCAAACTTTGTAGAAGTGTTCTTCACCAAGATCCCTCCACCACAGAACAAT
TTCTGTTCATGGGTAGGTGAGGGCGCACTGGAAGCTGGATTTTATACTCCATATATTGCG
CTGGATTTGACTGATCCAAGGGAAAAGATTGATTTAGAGATGGGAAACAAGGATATACTC
GTGGGGGGTATGCAGATCCCAACAGTGCTTCAGAACATAGACTATGGTTCCTTTGAAGAT
AATCCAGATGACAAGAACAGGAATGAAGATGATAGACTAGTGCCTTTTGCTTCAACTTGG
GTACAACAAGCAAATGAAGGTGCTCGAACATCTGAAATAGCTACTGTAGAATATAAGGAC
GAAATAAGTGAAGATGGTGGTAAGGAAATTATTAGTTCAAACACAAGTTCAGAACAAACA
TCAATAGAAGCTAATGCAGCAGCATCTGAGGATGAAAGCAATGAGGGCATTGCTGGAAAA
AGTAACAGTTCAGATAGAAGTTCTACCCAAAATTTGGGGGATGTGAACTAATAGATCTGT
ATTACTCATCTAAATTGATAATCTGTTCATATACATGGCCATTATGAGTTGACATTATTC
TTAGCATTACACATGATAA