Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0132600-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:1484073:1491751:1 gene:Os11g0132600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsWD40-181 description:Similar to Arabinoxylan arabinofuranohydrolase isoenzyme AXAH-II. (Os11t0132600-01);Similar to Arabinoxylan arabinofuranohydrolase isoenzyme AXAH-I. (Os11t0132600-02)
Sequence

ATGGGTTTCGAAGAAACATATTTTTCTGCCTTCTGTTACTTGCTTCTTTTCTCTGTCAGC
TGGAAATGCCAAGCTGCAGAACTGGACATGGCTCAGACAGCAGTACTCGAAGTTGATGCT
TCATGGAACCTTTCTCGAAAGATCCCTGACACGCTATTTGGATTGTTTTTCGAGGAAATT
AACCATGCCGGAGCTGGTGGGATATGGGCGGAGCTTGTCAGTAACAGAGGGTTTGAAGCT
GGAGGGCCCCACACCCCTTCAAATATTGACCCATGGTCTATCATTGGAGATGAATCCTCT
ATATACGTCACGACTGATTGCTCATCTTGTTTCCGCCAAAATATTGTTGCTCTAAGGATG
GAGATTCTCTGTGATAATTGTCCAGCCGGCGGTGTCGGCATTTACAACCCAGGATTCTGG
GGCATGAATATAGAAGAAGGAAAAGCCTATAATCTAGTCATGTATATCAGATCATTAGAA
TCAGTCGAATTGACAGCTTCGCTCACATGCTCAGATGGAATGCAAAATCTGGCATCAGTT
TCTATACAAGGTATTGATCTGTCAAATTGGACAAAGATAGAGTTGCAATTACTAGCTGAA
GGAACATGCAGAACTTCAAGACTTGAATTAACAAGTATGAAAAAGGGAATAATTTGGTTT
GATCAAGTGTCACTCATGCCTTCAGACACATACAAGGGCCATGGCTTTCGCAAGGAACTA
CTATACATGCTTTTGGAATTAAAACCACAGTTCCTACGCTTTCCTGGGGGGTGCTTTGTT
GAAGGCGATTGGTTAAGAAATGCTTTCAGGTGGAGGGAAACTATTGGTCCCTGGGAACAG
AGACCTGGGCACTTTGGAGATGTTTGGAATTATTGGACCGATGATGGCCTAGGATATTAC
GAGTTTCTCCAGCTTTCTGAAGACCTGGGTGCTGCCCCTATTTGGGTGTTCAATGTTGGG
ATCAGCCACCATGATGAAGTCGATACCACCATAATTGAACCTTTTGTTAAGGATGTATTG
GATAGTCTTGAATTTGCAAGGGGGAGAGCAGAATCGACATGGGGTTCTGTTAGAGCTGCA
ATGGGGCATCCAGAACGGTTCCCACTGAAGTATGTTGCTATTGGAAATGAAGATTGTGAC
AAGGGATTTTACCGAGGAAATTACCTCAAGTTTTATGATGCTATACGCAAGGCCTATCCG
GATATTCAAATGATTTCAAACTGTGATGGATCATCTAGGCCACTTGATCATCCTGCTGAT
TTATACGATTTCCATGTCTATACCAGTGCTGCTAATCTTTTTATCATGAAGAATAAGTTT
GATAGGACATCACGCATTGGGTCTAAGGTATTTGTCAGTGAGTATGCTGTCAATGAACAA
AGGGATGCTGGTAAAGGAAGCCTTCTTGCTTCACTGGCTGAGGCTGCTTTCCTTACTGGG
TTAGAGAAAAATAGTGATCTTGTTCAGATGGCAAGCTATGCACCGCTCTTCGTAAATGAC
AATGACCGCACCTGGAACCCAGATGCAATTGTATTCAATTCCTGGCAACAGTATGGCACT
CCTAGTTATTGGATGCAAACATATTTCCGTGAATCAAGTGGTTCTGTGATTCATCCAATT
ACGATCGGTTCCAGCTACTCCGATTCACTGGCTGCATCTGCAATCACCTGGAAAGACACA
CATGATATCTTTCTGAGAATAAAGATAGTAAACTTTGGGCCAAATGCTGTTAACCTCGCA
ATATCTTCAAGAGGACTTCAAGCTGGCGTCAATACGGCAAAATCAACTGTGACTGTTCTC
ACATCCGGCAATTTGCTGGATGAAAATTCATTTGCTGAACCAAACAAAGTCGTACCGGTT
AAAAGCGAGCTGCCAGATGCTTCAGAAGAGATGGAAGCAGCGCTCTCTCCTTATTCATTC
ACTTCATTTGACCTCGCTCTAGATCAGTACAGCAAGCTCGTGGCAGAGATGTGA

Peptide Sequence

PEP ID

Os11t0132600-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:1484073:1491751:1 gene:Os11g0132600 transcript:Os11t0132600-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsWD40-181 description:Similar to Arabinoxylan arabinofuranohydrolase isoenzyme AXAH-II. (Os11t0132600-01);Similar to Arabinoxylan arabinofuranohydrolase isoenzyme AXAH-I. (Os11t0132600-02)
Sequence

MGFEETYFSAFCYLLLFSVSWKCQAAELDMAQTAVLEVDASWNLSRKIPDTLFGLFFEEI
NHAGAGGIWAELVSNRGFEAGGPHTPSNIDPWSIIGDESSIYVTTDCSSCFRQNIVALRM
EILCDNCPAGGVGIYNPGFWGMNIEEGKAYNLVMYIRSLESVELTASLTCSDGMQNLASV
SIQGIDLSNWTKIELQLLAEGTCRTSRLELTSMKKGIIWFDQVSLMPSDTYKGHGFRKEL
LYMLLELKPQFLRFPGGCFVEGDWLRNAFRWRETIGPWEQRPGHFGDVWNYWTDDGLGYY
EFLQLSEDLGAAPIWVFNVGISHHDEVDTTIIEPFVKDVLDSLEFARGRAESTWGSVRAA
MGHPERFPLKYVAIGNEDCDKGFYRGNYLKFYDAIRKAYPDIQMISNCDGSSRPLDHPAD
LYDFHVYTSAANLFIMKNKFDRTSRIGSKVFVSEYAVNEQRDAGKGSLLASLAEAAFLTG
LEKNSDLVQMASYAPLFVNDNDRTWNPDAIVFNSWQQYGTPSYWMQTYFRESSGSVIHPI
TIGSSYSDSLAASAITWKDTHDIFLRIKIVNFGPNAVNLAISSRGLQAGVNTAKSTVTVL
TSGNLLDENSFAEPNKVVPVKSELPDASEEMEAALSPYSFTSFDLALDQYSKLVAEM

Transcript Sequence

Transcript ID

Os11t0132600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:1484073:1491751:1 gene:Os11g0132600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsWD40-181 description:Similar to Arabinoxylan arabinofuranohydrolase isoenzyme AXAH-II. (Os11t0132600-01);Similar to Arabinoxylan arabinofuranohydrolase isoenzyme AXAH-I. (Os11t0132600-02)
Sequence

GTCACGTTATGATGTAGCTCAGCTCACACTTGTCTTGTTCATAGCATGAGCATCGCACGC
CTATTTAAAGATGCTATAGCTTCGATTCCCTCCTGAGCTCTAACACTATCGAAGCTTCAC
AAATTCAGTTGACGAATTGTAGCTGTTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAA
TCCTTCGATCCATAGGCAGGACGCAGGACAGAGAATGGGTTTCGAAGAAACATATTTTTC
TGCCTTCTGTTACTTGCTTCTTTTCTCTGTCAGCTGGAAATGCCAAGCTGCAGAACTGGA
CATGGCTCAGACAGCAGTACTCGAAGTTGATGCTTCATGGAACCTTTCTCGAAAGATCCC
TGACACGCTATTTGGATTGTTTTTCGAGGAAATTAACCATGCCGGAGCTGGTGGGATATG
GGCGGAGCTTGTCAGTAACAGAGGGTTTGAAGCTGGAGGGCCCCACACCCCTTCAAATAT
TGACCCATGGTCTATCATTGGAGATGAATCCTCTATATACGTCACGACTGATTGCTCATC
TTGTTTCCGCCAAAATATTGTTGCTCTAAGGATGGAGATTCTCTGTGATAATTGTCCAGC
CGGCGGTGTCGGCATTTACAACCCAGGATTCTGGGGCATGAATATAGAAGAAGGAAAAGC
CTATAATCTAGTCATGTATATCAGATCATTAGAATCAGTCGAATTGACAGCTTCGCTCAC
ATGCTCAGATGGAATGCAAAATCTGGCATCAGTTTCTATACAAGGTATTGATCTGTCAAA
TTGGACAAAGATAGAGTTGCAATTACTAGCTGAAGGAACATGCAGAACTTCAAGACTTGA
ATTAACAAGTATGAAAAAGGGAATAATTTGGTTTGATCAAGTGTCACTCATGCCTTCAGA
CACATACAAGGGCCATGGCTTTCGCAAGGAACTACTATACATGCTTTTGGAATTAAAACC
ACAGTTCCTACGCTTTCCTGGGGGGTGCTTTGTTGAAGGCGATTGGTTAAGAAATGCTTT
CAGGTGGAGGGAAACTATTGGTCCCTGGGAACAGAGACCTGGGCACTTTGGAGATGTTTG
GAATTATTGGACCGATGATGGCCTAGGATATTACGAGTTTCTCCAGCTTTCTGAAGACCT
GGGTGCTGCCCCTATTTGGGTGTTCAATGTTGGGATCAGCCACCATGATGAAGTCGATAC
CACCATAATTGAACCTTTTGTTAAGGATGTATTGGATAGTCTTGAATTTGCAAGGGGGAG
AGCAGAATCGACATGGGGTTCTGTTAGAGCTGCAATGGGGCATCCAGAACGGTTCCCACT
GAAGTATGTTGCTATTGGAAATGAAGATTGTGACAAGGGATTTTACCGAGGAAATTACCT
CAAGTTTTATGATGCTATACGCAAGGCCTATCCGGATATTCAAATGATTTCAAACTGTGA
TGGATCATCTAGGCCACTTGATCATCCTGCTGATTTATACGATTTCCATGTCTATACCAG
TGCTGCTAATCTTTTTATCATGAAGAATAAGTTTGATAGGACATCACGCATTGGGTCTAA
GGTATTTGTCAGTGAGTATGCTGTCAATGAACAAAGGGATGCTGGTAAAGGAAGCCTTCT
TGCTTCACTGGCTGAGGCTGCTTTCCTTACTGGGTTAGAGAAAAATAGTGATCTTGTTCA
GATGGCAAGCTATGCACCGCTCTTCGTAAATGACAATGACCGCACCTGGAACCCAGATGC
AATTGTATTCAATTCCTGGCAACAGTATGGCACTCCTAGTTATTGGATGCAAACATATTT
CCGTGAATCAAGTGGTTCTGTGATTCATCCAATTACGATCGGTTCCAGCTACTCCGATTC
ACTGGCTGCATCTGCAATCACCTGGAAAGACACACATGATATCTTTCTGAGAATAAAGAT
AGTAAACTTTGGGCCAAATGCTGTTAACCTCGCAATATCTTCAAGAGGACTTCAAGCTGG
CGTCAATACGGCAAAATCAACTGTGACTGTTCTCACATCCGGCAATTTGCTGGATGAAAA
TTCATTTGCTGAACCAAACAAAGTCGTACCGGTTAAAAGCGAGCTGCCAGATGCTTCAGA
AGAGATGGAAGCAGCGCTCTCTCCTTATTCATTCACTTCATTTGACCTCGCTCTAGATCA
GTACAGCAAGCTCGTGGCAGAGATGTGAAGCAATGATGCACACTTATACCAGAGAATAGA
ACACAGGATGATTACGTGAGGTGTGGTACCTGAATTTCAGAAAGCTAACAGAGTGTATAT
ACTGCATTCTGGCATTTGCTAATCACACTTCGTGTGACCCTGTTGTTTATGACGCTGTAA
GAGTAGTTTAAGGTTGTCACATTATCGAACCTAGCGGTAACGCTAATTAATATCATTGTC
AATAAGCT