Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os11t0131900-01
CDS Infomation	cds chromosome:IRGSP-1.0:11:1453786:1459790:1 gene:Os11g0131900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Arabinofuranosidase 3 description:Similar to Arabinoxylan arabinofuranohydrolase isoenzyme AXAH-II. (Os11t0131900-01);Similar to alpha-N-arabinofuranosidase A. (Os11t0131900-02)
Sequence	ATGGCTTCCAGAGAATCCTTCATGAGTACCATTTTCTTCTTCTTGCTTCTGTTCTCCCTC GGCTGCAAGTGTATAGCTTCAGAGTTACACTTACATGCGACCCAGACTGCGGTCCTCAAG GTTGATGCCTCACCGCAACTTGCTCGACAGATCCCTGACACACTATTTGGAATATTTTTT GAGGAAATCAACCATGCAGGGGCTGGTGGAATATGGGCTGAACTTGTTAGTAACAGAGGT TTTGAAGCTGGAGGCCCTCATACCCCATCAAACATTGATCCATGGTCCATAATTGGTGAT GACTCTTCCATATTTGTGGCGACTGATCGAACGTCATGTTTTAGTCGGAATACTGTTGCT CTAAGGATGGAGGTTCTCTGTGATAATTGCCCAGCTGGTGGTGTTGGCATTTATAACCCA GGGTTCTGGGGCATGAACATAGAAGATGGAAAGATCTACAATTTAGTGATGTATGTTAAA TCACCAGAAACTGTGGAGTTGACAGTTTCCTTAACAAGTTCTGATGGGTCGCAAAATTTG GCTTCAACTACCATACCGGTTTCTGGTGCATCGAATTGGACAAAACTGGAGCAGAAGTTG GTTGCTCAAGGAACAAATAGAACCTCAAGGCTTCAAATAACAACTAACAAGAAGGGAGTT GTATGGTTTGATCAAGTATCGCTCATGCCTGCAGACACTTACAAGGGACATGGTTTTCGC ACAGAACTTATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTGGAGGT TGCTTTGTGGAGGGGGAATGGTTAAGGAACGCATTCAGGTGGAGGGAATCTATTGGTCCA TGGGAAGAGAGGCCTGGACACTTTGGGGATGTTTGGCATTACTGGACTGATGATGGCCTT GGATATTATGAATTTCTCCAGCTTTCTGAGGATCTGGGTGCTGCCCCAATCTGGGTGTTC AACAATGGAATCAGCCATAATGATGAAGTTGATACTGCTGCGATTGCTCCTTTTGTAAAA GACGTATTGGACAGTCTAGAATTTGCAAGGGGGAATGCAGATTCAACATGGGGTTCTGTT AGAGCTGCAATGGGGCACCCCGAACCATTCCCTGTCAAATACGTCGCAATTGGAAATGAA GATTGTGGGAAAAAATTTTACCGCGGTAATTACCTCAAGTTTTATAATGCTATAAGGGAG GCCTATCCAGACATTCAAATGATTTCAAATTGTGATGCTTCATCAAGTCCACTTGACCAT CCTGCTGATTTATATGATTTCCATGTCTATACTGATTCTAAGACTTTGTTTTCAATGAAG AATACATTTGATAGATCATCTCGTAATGGGCCCAAGGCTTTTGTCAGTGAATATGCTGTT TGGAGAAGTGATGCAGGTAGAGGAAGTCTACTTGCTTCATTGGCAGAGGCAGCTTTCCTT ACTGGACTGGAGAAGAATAGTGATGTTGTTCAGATGGCAAGTTATGCACCACTCTTCGTG AACAACAATGATCAAACGTGGAACCCAGACGCCATTGTATTTAACTCCTGGCAACAATAT GGAACTCCTAGTTACTGGATGCAGACTCTTTTCGGTGAATCTAGCGGTGCTATGTTTCAT CCAGTTACAATCACTTCCAGCTACTCTGGTTCTCTGGCAGCATCTGCAATTACTTGGCAG GATTCTGAAAATAGCTTCTTAAGAGTAAAGATTATAAACTTTGGGTCTGATCCAGTGAGC CTCACGATCTCTGCAACTGGGCTTCAGGCCCGTGTTAATGCACTGGGATCAACTGCCACT GTTCTCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGGTTGTT CCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTCACGCTTGCTCCTCAC TCTTTCTCCTCATTCGATCTTGCGCTTGCCCAGTCCAAACTCGTGGCAGAGATGTGA

Peptide Sequence

PEP ID	Os11t0131900-01
PEP Infomation	pep chromosome:IRGSP-1.0:11:1453786:1459790:1 gene:Os11g0131900 transcript:Os11t0131900-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Arabinofuranosidase 3 description:Similar to Arabinoxylan arabinofuranohydrolase isoenzyme AXAH-II. (Os11t0131900-01);Similar to alpha-N-arabinofuranosidase A. (Os11t0131900-02)
Sequence	MASRESFMSTIFFFLLLFSLGCKCIASELHLHATQTAVLKVDASPQLARQIPDTLFGIFF EEINHAGAGGIWAELVSNRGFEAGGPHTPSNIDPWSIIGDDSSIFVATDRTSCFSRNTVA LRMEVLCDNCPAGGVGIYNPGFWGMNIEDGKIYNLVMYVKSPETVELTVSLTSSDGSQNL ASTTIPVSGASNWTKLEQKLVAQGTNRTSRLQITTNKKGVVWFDQVSLMPADTYKGHGFR TELISMMLDLKPRFLRFPGGCFVEGEWLRNAFRWRESIGPWEERPGHFGDVWHYWTDDGL GYYEFLQLSEDLGAAPIWVFNNGISHNDEVDTAAIAPFVKDVLDSLEFARGNADSTWGSV RAAMGHPEPFPVKYVAIGNEDCGKKFYRGNYLKFYNAIREAYPDIQMISNCDASSSPLDH PADLYDFHVYTDSKTLFSMKNTFDRSSRNGPKAFVSEYAVWRSDAGRGSLLASLAEAAFL TGLEKNSDVVQMASYAPLFVNNNDQTWNPDAIVFNSWQQYGTPSYWMQTLFGESSGAMFH PVTITSSYSGSLAASAITWQDSENSFLRVKIINFGSDPVSLTISATGLQARVNALGSTAT VLTSSNVMDENSFSNPNKVVPVKSQLSNAAEQMQVTLAPHSFSSFDLALAQSKLVAEM

Transcript Sequence

Transcript ID	Os11t0131900-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:11:1453786:1459790:1 gene:Os11g0131900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Arabinofuranosidase 3 description:Similar to Arabinoxylan arabinofuranohydrolase isoenzyme AXAH-II. (Os11t0131900-01);Similar to alpha-N-arabinofuranosidase A. (Os11t0131900-02)
Sequence	ACTTAACACCAAAGCCTCGGTCTGTGTCTGTCCGCCCCCCAACGCCTCGCCGGCGCCCAG CTTCTCTTCCTTCCTTCCTTGTTGAGGTCTGAGGTCTTGGATGGTGGCCTTATGACACAC GGCCTGCACTAGTGTTTACAGCTCCAAGTATGGCTTCCAGAGAATCCTTCATGAGTACCA TTTTCTTCTTCTTGCTTCTGTTCTCCCTCGGCTGCAAGTGTATAGCTTCAGAGTTACACT TACATGCGACCCAGACTGCGGTCCTCAAGGTTGATGCCTCACCGCAACTTGCTCGACAGA TCCCTGACACACTATTTGGAATATTTTTTGAGGAAATCAACCATGCAGGGGCTGGTGGAA TATGGGCTGAACTTGTTAGTAACAGAGGTTTTGAAGCTGGAGGCCCTCATACCCCATCAA ACATTGATCCATGGTCCATAATTGGTGATGACTCTTCCATATTTGTGGCGACTGATCGAA CGTCATGTTTTAGTCGGAATACTGTTGCTCTAAGGATGGAGGTTCTCTGTGATAATTGCC CAGCTGGTGGTGTTGGCATTTATAACCCAGGGTTCTGGGGCATGAACATAGAAGATGGAA AGATCTACAATTTAGTGATGTATGTTAAATCACCAGAAACTGTGGAGTTGACAGTTTCCT TAACAAGTTCTGATGGGTCGCAAAATTTGGCTTCAACTACCATACCGGTTTCTGGTGCAT CGAATTGGACAAAACTGGAGCAGAAGTTGGTTGCTCAAGGAACAAATAGAACCTCAAGGC TTCAAATAACAACTAACAAGAAGGGAGTTGTATGGTTTGATCAAGTATCGCTCATGCCTG CAGACACTTACAAGGGACATGGTTTTCGCACAGAACTTATATCTATGATGTTGGACTTAA AACCACGATTCTTGAGATTCCCTGGAGGTTGCTTTGTGGAGGGGGAATGGTTAAGGAACG CATTCAGGTGGAGGGAATCTATTGGTCCATGGGAAGAGAGGCCTGGACACTTTGGGGATG TTTGGCATTACTGGACTGATGATGGCCTTGGATATTATGAATTTCTCCAGCTTTCTGAGG ATCTGGGTGCTGCCCCAATCTGGGTGTTCAACAATGGAATCAGCCATAATGATGAAGTTG ATACTGCTGCGATTGCTCCTTTTGTAAAAGACGTATTGGACAGTCTAGAATTTGCAAGGG GGAATGCAGATTCAACATGGGGTTCTGTTAGAGCTGCAATGGGGCACCCCGAACCATTCC CTGTCAAATACGTCGCAATTGGAAATGAAGATTGTGGGAAAAAATTTTACCGCGGTAATT ACCTCAAGTTTTATAATGCTATAAGGGAGGCCTATCCAGACATTCAAATGATTTCAAATT GTGATGCTTCATCAAGTCCACTTGACCATCCTGCTGATTTATATGATTTCCATGTCTATA CTGATTCTAAGACTTTGTTTTCAATGAAGAATACATTTGATAGATCATCTCGTAATGGGC CCAAGGCTTTTGTCAGTGAATATGCTGTTTGGAGAAGTGATGCAGGTAGAGGAAGTCTAC TTGCTTCATTGGCAGAGGCAGCTTTCCTTACTGGACTGGAGAAGAATAGTGATGTTGTTC AGATGGCAAGTTATGCACCACTCTTCGTGAACAACAATGATCAAACGTGGAACCCAGACG CCATTGTATTTAACTCCTGGCAACAATATGGAACTCCTAGTTACTGGATGCAGACTCTTT TCGGTGAATCTAGCGGTGCTATGTTTCATCCAGTTACAATCACTTCCAGCTACTCTGGTT CTCTGGCAGCATCTGCAATTACTTGGCAGGATTCTGAAAATAGCTTCTTAAGAGTAAAGA TTATAAACTTTGGGTCTGATCCAGTGAGCCTCACGATCTCTGCAACTGGGCTTCAGGCCC GTGTTAATGCACTGGGATCAACTGCCACTGTTCTCACATCCAGTAATGTGATGGATGAGA ACTCTTTTAGTAACCCGAATAAGGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAG AGCAGATGCAAGTCACGCTTGCTCCTCACTCTTTCTCCTCATTCGATCTTGCGCTTGCCC AGTCCAAACTCGTGGCAGAGATGTGAAGCAGCAACACAAGGTTAGCGACAGAAACACAAG AAATACACGAGATGTGATATGCGAATACCAGAATGCTGTCCATATATGTGCATGTATCTT GAAGCACTACTGTATAGTGTAATACACAGGGAATGATGAATAAAATTCACTCCTGGCTTA CTTC