Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os11t0130300-02
CDS Infomation	cds chromosome:IRGSP-1.0:11:1392814:1394979:1 gene:Os11g0130300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nse1 non-SMC component of SMC5-6 complex family protein. (Os11t0130300-01);Nse1 non-SMC component of SMC5-6 complex family protein. (Os11t0130300-02)
Sequence	ATGGCGCCGCTCTCGTGGCGCCACCACACGCTGCTGCAGGCGCTGCTCTCCCGCGGGCCC CTCTCGGAGCGCGACTTCCACGCCCTCTTCTCCGCCATCTCCGGCGGCAAGAACCCCGCC ACTCATCGGCAGCTGTTCGATGATACACTCCTCAAGATCAACAAGGAGCTCACGTACTTG CAGTTTGAGTTAAGAGCAGGCATAAACCAGTATGATGGTACTGTGTATTATGGAGTGGTC AATAACATTGCTGATGAAGAGTCAAAGCTTGGATCAAAGTTTTCTGTGCCACAGATTGCA TTCTACAAGGGATTGTTGGAAGCAATAGTTCATGAAGCTGGAAATGATGGGAGCATAACA AATATCGATGCTCTTAACACACGGATTGAGAACCAGGTTGTAATTGCAGACGCTTCACAG GGCAGTCAATCCCGTCTGCCTACTTCCATTACCAACTTCTCATTGTCCCAAAAGGAGAAA ACTCTTAATGAACTCATACAGGATCGTTGGCTGTCATACACTCCCACAGGAAAGATTGGT CTTGGCATAAGATCATTTCTTGATCTCCGAAGTTGGTTACGTAGTAATGATATCCCATCA TGTGAGGTCTGCAATGAAGCTTGTATAAAGGCATCATGTTGTCCTAATGAGGAATGCAAT GTAAGGATTCATGGGTACTGTTTGAAGAAGAAATTTTCGCAGAGAAAGGCCTCGAGAGCT TGTGGTTGTGGTACTGAATGGCCTCGGTTGGAGGGTGAAGATGACGGTGCTGAGGATGAG GATGTTAACGAACCTGAGGAAGATCAGGTCCCATCAGCCAACCAGCATTCGAGGACTAGA CGCAGAGGTGTCAAATCTGAACTGGTGGAAGAAAATGAAAGAGCAGGCCCATCAGCGAGG ATGACAAGGAGGGCTTTGAGAAGCTCTAAAGCTGAAGCAGTTGAGGCTGCTCAAGAGGTG CCATCTGCAGCAGGACCTTCGCAGTCAACCAGGGCATCTAAGAGAAGAAAGAACTGA

Peptide Sequence

PEP ID	Os11t0130300-02
PEP Infomation	pep chromosome:IRGSP-1.0:11:1392814:1394979:1 gene:Os11g0130300 transcript:Os11t0130300-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nse1 non-SMC component of SMC5-6 complex family protein. (Os11t0130300-01);Nse1 non-SMC component of SMC5-6 complex family protein. (Os11t0130300-02)
Sequence	MAPLSWRHHTLLQALLSRGPLSERDFHALFSAISGGKNPATHRQLFDDTLLKINKELTYL QFELRAGINQYDGTVYYGVVNNIADEESKLGSKFSVPQIAFYKGLLEAIVHEAGNDGSIT NIDALNTRIENQVVIADASQGSQSRLPTSITNFSLSQKEKTLNELIQDRWLSYTPTGKIG LGIRSFLDLRSWLRSNDIPSCEVCNEACIKASCCPNEECNVRIHGYCLKKKFSQRKASRA CGCGTEWPRLEGEDDGAEDEDVNEPEEDQVPSANQHSRTRRRGVKSELVEENERAGPSAR MTRRALRSSKAEAVEAAQEVPSAAGPSQSTRASKRRKN

Transcript Sequence

Transcript ID	Os11t0130300-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:11:1392814:1394979:1 gene:Os11g0130300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nse1 non-SMC component of SMC5-6 complex family protein. (Os11t0130300-01);Nse1 non-SMC component of SMC5-6 complex family protein. (Os11t0130300-02)
Sequence	AATTCCATTTCATCCCCAAACTTCCTTCTGCTCTTGCTAGGGTTCCTTCCTTCATTCCTT CATCTCCCTCCCATTCCGTCCCTCTCTTCCAGATTACTAGCGAGCTCGATCCTGCGGCAG GGGCAAGTCGAGCGATGGCGCCGCTCTCGTGGCGCCACCACACGCTGCTGCAGGCGCTGC TCTCCCGCGGGCCCCTCTCGGAGCGCGACTTCCACGCCCTCTTCTCCGCCATCTCCGGCG GCAAGAACCCCGCCACTCATCGGCAGCTGTTCGATGATACACTCCTCAAGATCAACAAGG AGCTCACGTACTTGCAGTTTGAGTTAAGAGCAGGCATAAACCAGTATGATGGTACTGTGT ATTATGGAGTGGTCAATAACATTGCTGATGAAGAGTCAAAGCTTGGATCAAAGTTTTCTG TGCCACAGATTGCATTCTACAAGGGATTGTTGGAAGCAATAGTTCATGAAGCTGGAAATG ATGGGAGCATAACAAATATCGATGCTCTTAACACACGGATTGAGAACCAGGTTGTAATTG CAGACGCTTCACAGGGCAGTCAATCCCGTCTGCCTACTTCCATTACCAACTTCTCATTGT CCCAAAAGGAGAAAACTCTTAATGAACTCATACAGGATCGTTGGCTGTCATACACTCCCA CAGGAAAGATTGGTCTTGGCATAAGATCATTTCTTGATCTCCGAAGTTGGTTACGTAGTA ATGATATCCCATCATGTGAGGTCTGCAATGAAGCTTGTATAAAGGCATCATGTTGTCCTA ATGAGGAATGCAATGTAAGGATTCATGGGTACTGTTTGAAGAAGAAATTTTCGCAGAGAA AGGCCTCGAGAGCTTGTGGTTGTGGTACTGAATGGCCTCGGTTGGAGGGTGAAGATGACG GTGCTGAGGATGAGGATGTTAACGAACCTGAGGAAGATCAGGTCCCATCAGCCAACCAGC ATTCGAGGACTAGACGCAGAGGTGTCAAATCTGAACTGGTGGAAGAAAATGAAAGAGCAG GCCCATCAGCGAGGATGACAAGGAGGGCTTTGAGAAGCTCTAAAGCTGAAGCAGTTGAGG CTGCTCAAGAGGTGCCATCTGCAGCAGGACCTTCGCAGTCAACCAGGGCATCTAAGAGAA GAAAGAACTGATGAGATTGATCTGTGCTTGCTAGTGAGATCTCCAGGTTCCTTTTGTCAT GTACATACAGTAGCAGTAGCCAGTAGGTAATCCTTTTGAAGTGGCAGGCAAAGTTGCAAC TTCTAGTTGGAGAGGAATATATATAGCTTTCGGATGCTCTTGTTACTAACTCTTAGAACG TATTAGAAGCCTAATGCTTTCATTTGGCAAAGCAAGCCTGCTTGTGGCAGCACAGTTAAT TGTTTGAATGGCTCTCTTGCTTGTTGATGCTAGTTTCATGC