Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0130200-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:1390586:1391712:-1 gene:Os11g0130200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF309 family protein. (Os11t0130200-01)
Sequence

ATGGCGCACTCCCACTCTGCGGCTTCGCTGCACGCCGCCCGGCTACTACCGCAGCAGCGC
ACGCCCACCGCGCCACGGACACTGTTGCCGGCGGGCGGTGGCCTCTTGCTCCGCCGCCCC
CACCCACCGCTCCACCAGCAGCGCCGCAGCCGCTCCTCCTCTCGTCCTGACCTCCGCTGC
CGCCGCCGCCTCCTCACCGCGCGGGGTGACTACGACTTCTACGAGAACTATGCCGATGAA
GAAGGAGATGAGGAGGAGGAGTCGGAAGTCATAGGTGGGAGCTTCGACGCGGCGGTGGCG
CTGTTCAACGGCGGCGAGTTCCACGCGTGCCACGACGTGGTGGAGGAGCTCTGGTACACC
GCCGAGGAGCCCACCCGGACGCTGCTCCACGCCATCCTCCAGTGCGCCGTCGCCTTCCAC
CACCTCTTCAACCAAAACCACCGTGGCGCCATGATGGAGCTCGGGGAAGGCCTCTGCAAG
CTCCGCAAGCTGCGTCTCGACGACGACACCACGAGCCCATTCTCTCGGTTCCAGGAGGAG
GTCGCCGCGGCGCTCAACTTCATCTACCGCACACAGAAGGAGCTCGCGGCGTGCACCGAC
GATCTCTGCCTCACCATGGATGGCTCCGCGACCTCCTACCAGCTGCTTGGCAACTTCGCC
GCTGGCCAGAAGCTCTACCGGCTTGAAACAACAACCAGTGCAGATGGAGATGGCGTTCCA
ACTATAATCTTCTCTGCTTCTTCACGACTCGTCAGGGTGAAGCTCCCCACATTGAGCGCC
ACGGAGCATCATCTAGCAGCGCTTCAATGTACAAGCGAGTATATTTAG

Peptide Sequence

PEP ID

Os11t0130200-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:1390586:1391712:-1 gene:Os11g0130200 transcript:Os11t0130200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF309 family protein. (Os11t0130200-01)
Sequence

MAHSHSAASLHAARLLPQQRTPTAPRTLLPAGGGLLLRRPHPPLHQQRRSRSSSRPDLRC
RRRLLTARGDYDFYENYADEEGDEEEESEVIGGSFDAAVALFNGGEFHACHDVVEELWYT
AEEPTRTLLHAILQCAVAFHHLFNQNHRGAMMELGEGLCKLRKLRLDDDTTSPFSRFQEE
VAAALNFIYRTQKELAACTDDLCLTMDGSATSYQLLGNFAAGQKLYRLETTTSADGDGVP
TIIFSASSRLVRVKLPTLSATEHHLAALQCTSEYI

Transcript Sequence

Transcript ID

Os11t0130200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:1390586:1391712:-1 gene:Os11g0130200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF309 family protein. (Os11t0130200-01)
Sequence

GTTCCTAATTCGATTCCCATGGCGCACTCCCACTCTGCGGCTTCGCTGCACGCCGCCCGG
CTACTACCGCAGCAGCGCACGCCCACCGCGCCACGGACACTGTTGCCGGCGGGCGGTGGC
CTCTTGCTCCGCCGCCCCCACCCACCGCTCCACCAGCAGCGCCGCAGCCGCTCCTCCTCT
CGTCCTGACCTCCGCTGCCGCCGCCGCCTCCTCACCGCGCGGGGTGACTACGACTTCTAC
GAGAACTATGCCGATGAAGAAGGAGATGAGGAGGAGGAGTCGGAAGTCATAGGTGGGAGC
TTCGACGCGGCGGTGGCGCTGTTCAACGGCGGCGAGTTCCACGCGTGCCACGACGTGGTG
GAGGAGCTCTGGTACACCGCCGAGGAGCCCACCCGGACGCTGCTCCACGCCATCCTCCAG
TGCGCCGTCGCCTTCCACCACCTCTTCAACCAAAACCACCGTGGCGCCATGATGGAGCTC
GGGGAAGGCCTCTGCAAGCTCCGCAAGCTGCGTCTCGACGACGACACCACGAGCCCATTC
TCTCGGTTCCAGGAGGAGGTCGCCGCGGCGCTCAACTTCATCTACCGCACACAGAAGGAG
CTCGCGGCGTGCACCGACGATCTCTGCCTCACCATGGATGGCTCCGCGACCTCCTACCAG
CTGCTTGGCAACTTCGCCGCTGGCCAGAAGCTCTACCGGCTTGAAACAACAACCAGTGCA
GATGGAGATGGCGTTCCAACTATAATCTTCTCTGCTTCTTCACGACTCGTCAGGGTGAAG
CTCCCCACATTGAGCGCCACGGAGCATCATCTAGCAGCGCTTCAATGTACAAGCGAGTAT
ATTTAGTTTCTTTTTTTTTCCCTGATAAAATGTTTAGCTCTTCCGATCCGTTTGAACCAA
ATTGTAGTTTTCTGTACTTGGGAAACGAGGAATGGAGTCAAATGGATTATAGTACCATTG
GTTTCCTTTTCTTTCCCTTCAATTTTTCTCTGCACATACTCTTATTATACGATGATGCTA
ATTTT