Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0128000-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:1288730:1292348:-1 gene:Os11g0128000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to secondary cell wall-related glycosyltransferase family 47. (Os11t0128000-01)
Sequence

ATGCCTCCCCGCGCCCGCACCCTCCTCATGCCGCTTGCGGCGGCGACGCTCCTCGTCGCC
TCCACCATCTTCCTCTTCGCCGCCACCGGCGCTCGATGGCGACCCGCCGACACCGGCCTC
CCGGTCCCCGCCGCCGACTTCTCTGCGGCCGTTATAGAGAGCGCGGTGACCGACGCCGCC
GCCGCGAAGGAGGAGCTCTCGTTTGTTGACGAGAATGGCCGCCCCGACGACCCCGCCTCC
AGCTCGGCGGCCGCCGCGAGATGCGACCCGAGCCACGCCGCCGTCAGGGTCTTCATGTAC
GACTTGCCGCCGGAGTTCCACTTCGGCCTCCTCGGCTGGTCGCCGCCGACAGATGGAGCC
GCCGACGCCGCCATGTGGCCGGATGTCGGCAGCGGCGCCGCCGCCCCGCGGTACCCCGGT
GGGCTCAACCAGCAGCACAGCGTCGAGTACTGGCTCACGCTCGATCTCCTCTCCTCCTCG
TCGCCGCCGTGCGGTGCCGCCGTCAGGGTCGCCGACTCCCGCGACGCCGACGTGGTGTTC
GTGCCGTTCTTCGCTTCCCTCAGCTACAATCGCCACTCCAGGGTTGTGCCTCCGGAGAAG
GTGAGCAGGGACAAGGGATTGCAGGAGAGGCTGGTCAGGTATCTGATGGCGCAGCCGGAG
TGGAAGAGGTCGGGTGGCGCCGACCATGTCATTGTCGCGCACCACCCGAATAGCTTGCTC
CATGCCCGGTCAGTGCTGTTCCCGGCGGTGTTCGTGCTGTCTGACTTCGGGAGATACCAT
CCTAGAGTAGCCAGCTTGGAGAAGGATGTCATTGCCCCTTACAAGCATATGGCTAAGACG
TTTGTGAATGATTCTGCTGGGTTCGATGACCGTCCGACATTGTTATACTTCCGGGGAGCA
ATTTTCAGGAAGGAGGGAGGGAACATTCGGCAGGAGCTACATTATATGCTCAAAGACGAA
AAGGATGTTTATTTTGCCTTTGGAAGTGTCCAGGACCACGGGGCCAGCAAAGCCAGTCAG
GGAATGCACGCATCAAAATTTTGCCTAAACATTGCAGGGGACACCCCTTCTTCCAATCGC
CTGTTTGACGCTATAGTAAGTCATTGCGTCCCTGTTATCATCAGCGACGACATCGAGCTT
CCTTATGAAGATGCATTGGACTATTCGAAGTTTTCCATCTTTGTTCGCTCATCTGATGCT
GTGAAAAAGGGTTACTTGATGAGACTTATTAGAGGAGTAAGTAAGCATCAATGGACAATG
ATGTGGAGAAGGCTGAAAGAAGTGGATAAACATTTTGAGTATCAGTACCCATCCCAGAAG
GATGATGCAGTCCAAATGATCTGGCAAACATTGGCTAGAAAGGTGCCAGCAATCCGCCTG
AAGTCACATAGGTCTAGAAGATTTTCTAGATACGATAGAGGAGGAAAATAA

Peptide Sequence

PEP ID

Os11t0128000-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:1288730:1292348:-1 gene:Os11g0128000 transcript:Os11t0128000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to secondary cell wall-related glycosyltransferase family 47. (Os11t0128000-01)
Sequence

MPPRARTLLMPLAAATLLVASTIFLFAATGARWRPADTGLPVPAADFSAAVIESAVTDAA
AAKEELSFVDENGRPDDPASSSAAAARCDPSHAAVRVFMYDLPPEFHFGLLGWSPPTDGA
ADAAMWPDVGSGAAAPRYPGGLNQQHSVEYWLTLDLLSSSSPPCGAAVRVADSRDADVVF
VPFFASLSYNRHSRVVPPEKVSRDKGLQERLVRYLMAQPEWKRSGGADHVIVAHHPNSLL
HARSVLFPAVFVLSDFGRYHPRVASLEKDVIAPYKHMAKTFVNDSAGFDDRPTLLYFRGA
IFRKEGGNIRQELHYMLKDEKDVYFAFGSVQDHGASKASQGMHASKFCLNIAGDTPSSNR
LFDAIVSHCVPVIISDDIELPYEDALDYSKFSIFVRSSDAVKKGYLMRLIRGVSKHQWTM
MWRRLKEVDKHFEYQYPSQKDDAVQMIWQTLARKVPAIRLKSHRSRRFSRYDRGGK

Transcript Sequence

Transcript ID

Os11t0128000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:1288730:1292348:-1 gene:Os11g0128000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to secondary cell wall-related glycosyltransferase family 47. (Os11t0128000-01)
Sequence

GGCTACTCCAGCCTAGGGGGAGTAGGGAGATCGATCCGCCTCCGCCTCCGCCTCCGCCAT
GCTCCCTCCTACTCCACCAATCCGGCCATGACCAGGGCTCGCCGCCATGCCTCCCCGCGC
CCGCACCCTCCTCATGCCGCTTGCGGCGGCGACGCTCCTCGTCGCCTCCACCATCTTCCT
CTTCGCCGCCACCGGCGCTCGATGGCGACCCGCCGACACCGGCCTCCCGGTCCCCGCCGC
CGACTTCTCTGCGGCCGTTATAGAGAGCGCGGTGACCGACGCCGCCGCCGCGAAGGAGGA
GCTCTCGTTTGTTGACGAGAATGGCCGCCCCGACGACCCCGCCTCCAGCTCGGCGGCCGC
CGCGAGATGCGACCCGAGCCACGCCGCCGTCAGGGTCTTCATGTACGACTTGCCGCCGGA
GTTCCACTTCGGCCTCCTCGGCTGGTCGCCGCCGACAGATGGAGCCGCCGACGCCGCCAT
GTGGCCGGATGTCGGCAGCGGCGCCGCCGCCCCGCGGTACCCCGGTGGGCTCAACCAGCA
GCACAGCGTCGAGTACTGGCTCACGCTCGATCTCCTCTCCTCCTCGTCGCCGCCGTGCGG
TGCCGCCGTCAGGGTCGCCGACTCCCGCGACGCCGACGTGGTGTTCGTGCCGTTCTTCGC
TTCCCTCAGCTACAATCGCCACTCCAGGGTTGTGCCTCCGGAGAAGGTGAGCAGGGACAA
GGGATTGCAGGAGAGGCTGGTCAGGTATCTGATGGCGCAGCCGGAGTGGAAGAGGTCGGG
TGGCGCCGACCATGTCATTGTCGCGCACCACCCGAATAGCTTGCTCCATGCCCGGTCAGT
GCTGTTCCCGGCGGTGTTCGTGCTGTCTGACTTCGGGAGATACCATCCTAGAGTAGCCAG
CTTGGAGAAGGATGTCATTGCCCCTTACAAGCATATGGCTAAGACGTTTGTGAATGATTC
TGCTGGGTTCGATGACCGTCCGACATTGTTATACTTCCGGGGAGCAATTTTCAGGAAGGA
GGGAGGGAACATTCGGCAGGAGCTACATTATATGCTCAAAGACGAAAAGGATGTTTATTT
TGCCTTTGGAAGTGTCCAGGACCACGGGGCCAGCAAAGCCAGTCAGGGAATGCACGCATC
AAAATTTTGCCTAAACATTGCAGGGGACACCCCTTCTTCCAATCGCCTGTTTGACGCTAT
AGTAAGTCATTGCGTCCCTGTTATCATCAGCGACGACATCGAGCTTCCTTATGAAGATGC
ATTGGACTATTCGAAGTTTTCCATCTTTGTTCGCTCATCTGATGCTGTGAAAAAGGGTTA
CTTGATGAGACTTATTAGAGGAGTAAGTAAGCATCAATGGACAATGATGTGGAGAAGGCT
GAAAGAAGTGGATAAACATTTTGAGTATCAGTACCCATCCCAGAAGGATGATGCAGTCCA
AATGATCTGGCAAACATTGGCTAGAAAGGTGCCAGCAATCCGCCTGAAGTCACATAGGTC
TAGAAGATTTTCTAGATACGATAGAGGAGGAAAATAAACATGGAGAAGATCCATAAGTCT
GAAAGATTTTCAAGATCTGGCACAGGAAGAAAATAAACAGGAAGGCGGTGTATGCATGTT
ATCTAGGGCCTTGGCTAATCTAACTAGCATTTCACTGACACATCCGTTGTACACGTCTCA
TGGTTTCATGAACATAATCGGATTAGCAAGGAACAGTGAGATGTAAAGATATCATGTTAA
TTGTTGGTTATTCCTTAGAAAGAGGACCCATAGCTTAGGTTAGGCTGTCCAACGGAAGTG
TATACTGGCAGGCAAAAGATTGTTGTTTTTGTAACATATACTCTTAAAAGTAAATTAAAA
GAGGGTGGCAAAGTTCTTTTTCTGAAC