Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0123500-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:1078104:1082412:-1 gene:Os11g0123500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Snf7 family protein. (Os11t0123500-01)
Sequence

ATGCTGAAGAAACTGCTATCAAAGCCTAAGAGCAAGAAGAAGGAGGCTGCCTCCTCTGCG
CTCCCCACTTTGGATCGTCTCCATGAGACTCTAGAAATGCTGGAGAAGAAAGAGTGCTTT
CTTCAGAAGAAGGCTTCTGCAGAAGTTGAAAAGGCTAAGGATTATACAAAAGCTAAGAAC
AAAAGCGCTGCAATTCAGTGTCTAAAGAAAAAGAAGCTGTATGAAACACAAATTGAGCAG
CTAGCAAATTTCCAATTGCGAGTTCATGATCAGATAATAATGCTTGAGAGCGCAAAGGCA
ACCACAGATACCGTTGATGCTTTGCGCTCTGGATCATCTGCTGTCAAAGCTATTCATCAG
TCAGTGAGTATTGATGACATTGAAAATGCCATTGAAGAGGCAAATGAACACACAGAAAAT
ATGAGGCAGATACAGGAGGCACTTGCAACACCAATTGGCGCTTCTGCTGATTTCGACGAG
GATGAACTAGAAGCAGAGCTGGAAGATCTGGAGGAGGAAGAGCTCGACCATGAGCTGCCT
GAACCACCTCAGAGTACACGCATGGAACCATCAGCGAGAGTTACAACTTCATCTCAACCA
GCCAATGATTTGGCTGAACTGACCAAACTTCAAGCAGAGATGGCGCTTTAA

Peptide Sequence

PEP ID

Os11t0123500-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:1078104:1082412:-1 gene:Os11g0123500 transcript:Os11t0123500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Snf7 family protein. (Os11t0123500-01)
Sequence

MLKKLLSKPKSKKKEAASSALPTLDRLHETLEMLEKKECFLQKKASAEVEKAKDYTKAKN
KSAAIQCLKKKKLYETQIEQLANFQLRVHDQIIMLESAKATTDTVDALRSGSSAVKAIHQ
SVSIDDIENAIEEANEHTENMRQIQEALATPIGASADFDEDELEAELEDLEEEELDHELP
EPPQSTRMEPSARVTTSSQPANDLAELTKLQAEMAL

Transcript Sequence

Transcript ID

Os11t0123500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:1078104:1082412:-1 gene:Os11g0123500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Snf7 family protein. (Os11t0123500-01)
Sequence

GGTGAGCTTCCGGGGGCGGTGCAGGGTGCGGCCGCACGGCTCGGCGTCGTCAATGCGGGC
GATGGTAGCCTGGTAGGTTTGCACTCGTCTGGGGGGATTTGAGAGTCCTTGAGCAAGTGG
ATCCGTAGCTTTCGTTGGCCATCATCATCTGACAGTAAGAATCCAGAGGTGGGTGTGACA
AGAAGATGCTGAAGAAACTGCTATCAAAGCCTAAGAGCAAGAAGAAGGAGGCTGCCTCCT
CTGCGCTCCCCACTTTGGATCGTCTCCATGAGACTCTAGAAATGCTGGAGAAGAAAGAGT
GCTTTCTTCAGAAGAAGGCTTCTGCAGAAGTTGAAAAGGCTAAGGATTATACAAAAGCTA
AGAACAAAAGCGCTGCAATTCAGTGTCTAAAGAAAAAGAAGCTGTATGAAACACAAATTG
AGCAGCTAGCAAATTTCCAATTGCGAGTTCATGATCAGATAATAATGCTTGAGAGCGCAA
AGGCAACCACAGATACCGTTGATGCTTTGCGCTCTGGATCATCTGCTGTCAAAGCTATTC
ATCAGTCAGTGAGTATTGATGACATTGAAAATGCCATTGAAGAGGCAAATGAACACACAG
AAAATATGAGGCAGATACAGGAGGCACTTGCAACACCAATTGGCGCTTCTGCTGATTTCG
ACGAGGATGAACTAGAAGCAGAGCTGGAAGATCTGGAGGAGGAAGAGCTCGACCATGAGC
TGCCTGAACCACCTCAGAGTACACGCATGGAACCATCAGCGAGAGTTACAACTTCATCTC
AACCAGCCAATGATTTGGCTGAACTGACCAAACTTCAAGCAGAGATGGCGCTTTAATCAC
AGTTTGGAGGGATTTGTTTGTATTTTGCTGACATCCTGTTTGTGTAGTGTACTCGGAAAT
AACATGTTGTAAATTCAGTTTGTTGTAGAAAAAAACCCTTCCTTTTATAATTTGTTCTTT
TCTGTT