Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0118300-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:823449:825737:-1 gene:Os11g0118300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to RPT2-like protein. (Os11t0118300-01)
Sequence

GATCGCAGGAAATCGTATCTGCCTACTTTTCGAGAGCTTAACAAGGGAGAGCTCCTTAAT
TGCCACGTCCCGCCCGCTCACTGCCTAAGCTTCCAAGTTCCAACGGGGACATCTCTTCTC
TTGCACCTTCCTGATTTCATGGATCGGACAAGCCAGTGGGTCTCGTCGCCGGACATCCCC
GCCGATCTTCTCATCCGGATCGCCGACGACGTCTTCCCTCTCCATAAGGCGGTGATGGTG
CCCAAGTGCTGCTACATCCGCAAGGCCGTAGCGGCGGCGCGCGGTGGCGCAACGGCCACC
GTCGACCTCGACCTGTCCGCGCTGCCCGGCGCCGCCGACGCCTTCGACAAGGTGGCGCGC
TACTGCTACGGCGCCAACTTCGAGCTATCCGTGCGCAACGCGGCCGCGCTCCTCTGCGCC
GCCGCCTTCCTCGACATGCACCCAACGGACGGCGGCCTGGCGCGCCGCGTCGAGGAGTTC
CTGGCCAAGGTAGGCCTCCGCACGCTGCCCGGCGCCGTCGCCGTTCTGCGCTCCTGCGAG
GGGCTCCTCCCGGCCGCCGAGGAGATCGGCGTCGTGCAGCGATCAGCTGATGCTATCGCG
CTCAGGATCTGCAACGAGGTGCTGTTCCCGACGAGGTCGCCGCCCGAGTGGTGGACGGCG
GAGCTCGCCGCCCTCTCGCCGGCGTCGTTCCACAAGGTCATCACGGCGCTGCGCTGCCGC
CGCGCTGAACCCGAGGTGCTTGTCGCTGCGGCGACCGCTTACGCTGAGCTCTTGCTGGCC
GAAGTGCTCGCCGCCGACGGCCATGCTGCTGATCACTCCGGGATGCACCGCGCGCTTGTC
GAGTCCGTGGTGGCCGTGCTCCCTTCCACGGACGACGCGCCCCTCCCCGCCGCGTTCCTC
TGCCACCTCCTCCACGTCGCCATCACCATCGGCGCATCCGCCAAGACGTGCCACGACCTG
GAGCTCCGCGTGGCGGCGGTGCTCGACCAGGCCACCGCGGGCGACCTGCTGACCGTCGCG
CTCGACGGCGCCGGTGAGCGCGTCCAGAACGTCGACGCCGTGCGCCGCATCATCACCGCC
TTCGTGGAGCGCGACTCTGCGGCGTCATCGGGCGGCGGCGCGAACGGCCGGAACCGGAGG
GCGTCCCTGAGCGGAGCCGGGGCGCTGCAGGGCGGCGGTGGCGCGATGCAGACGGTGGCG
AAGACCGTGGACGAGGTCGCGGCGGAGATCGCGACGGAGGAGTCGCTGCCGATCTCCAAG
TTCGTGGGGCTCGCCGGCGCGGTGCCGAAGGAGGCGCGCGCGACGCACGACTGCCTGTAC
CGCGCCGTCGACATCTACCTGAAGGCGCACCCGGCGCTGGAGGAGATGGAGAGGGAGAAG
GTGTGCAGCGTGATGGACCCGCTGAAGCTGTCGTACCAGGGTCGCCTCCACGCGTCACAG
AACAATCGGCTCCCGCTGCAGGCCGTGCTGAGCGCGCTCTACTACGACCGGCTCAAGCTC
CGCAGCGGAGACGAGGGCGGCGGCGGGTGGGACGCGTATGGGAATGGCGTGATGAGGTCG
TCGGCGGCGGGGTCGGCGAGGAAGCAGGCGAAGGAGGAGGCGTCGCTGGCGAGGGAGAAC
GAGGCGCTGCGGTCGGAGCTGGCGCGGATGCGGGCGTACGTGTCGGGGATGCAGCAGCAG
AGCAAGGGGTCGTCGTCGTCGAGGGGGAAGAAGGGCTCGTGGTTGCGGACGTTGAGCCGG
CTGAACCCGTTCAAGGCCGGCATCTGGGGCAAGGACACGTCGGGCATCGTCGACGGGAAG
ACGGACGCCATGAATTCCGTCAAGTCCAAGAGGAGGAGGTTCTCCATTAGCTAG

Peptide Sequence

PEP ID

Os11t0118300-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:823449:825737:-1 gene:Os11g0118300 transcript:Os11t0118300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to RPT2-like protein. (Os11t0118300-01)
Sequence

DRRKSYLPTFRELNKGELLNCHVPPAHCLSFQVPTGTSLLLHLPDFMDRTSQWVSSPDIP
ADLLIRIADDVFPLHKAVMVPKCCYIRKAVAAARGGATATVDLDLSALPGAADAFDKVAR
YCYGANFELSVRNAAALLCAAAFLDMHPTDGGLARRVEEFLAKVGLRTLPGAVAVLRSCE
GLLPAAEEIGVVQRSADAIALRICNEVLFPTRSPPEWWTAELAALSPASFHKVITALRCR
RAEPEVLVAAATAYAELLLAEVLAADGHAADHSGMHRALVESVVAVLPSTDDAPLPAAFL
CHLLHVAITIGASAKTCHDLELRVAAVLDQATAGDLLTVALDGAGERVQNVDAVRRIITA
FVERDSAASSGGGANGRNRRASLSGAGALQGGGGAMQTVAKTVDEVAAEIATEESLPISK
FVGLAGAVPKEARATHDCLYRAVDIYLKAHPALEEMEREKVCSVMDPLKLSYQGRLHASQ
NNRLPLQAVLSALYYDRLKLRSGDEGGGGWDAYGNGVMRSSAAGSARKQAKEEASLAREN
EALRSELARMRAYVSGMQQQSKGSSSSRGKKGSWLRTLSRLNPFKAGIWGKDTSGIVDGK
TDAMNSVKSKRRRFSIS

Transcript Sequence

Transcript ID

Os11t0118300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:823449:825737:-1 gene:Os11g0118300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to RPT2-like protein. (Os11t0118300-01)
Sequence

AGATCGCAGGAAATCGTATCTGCCTACTTTTCGAGAGCTTAACAAGGGAGAGCTCCTTAA
TTGCCACGTCCCGCCCGCTCACTGCCTAAGCTTCCAAGTTCCAACGGGGACATCTCTTCT
CTTGCACCTTCCTGATTTCATGGATCGGACAAGCCAGTGGGTCTCGTCGCCGGACATCCC
CGCCGATCTTCTCATCCGGATCGCCGACGACGTCTTCCCTCTCCATAAGGCGGTGATGGT
GCCCAAGTGCTGCTACATCCGCAAGGCCGTAGCGGCGGCGCGCGGTGGCGCAACGGCCAC
CGTCGACCTCGACCTGTCCGCGCTGCCCGGCGCCGCCGACGCCTTCGACAAGGTGGCGCG
CTACTGCTACGGCGCCAACTTCGAGCTATCCGTGCGCAACGCGGCCGCGCTCCTCTGCGC
CGCCGCCTTCCTCGACATGCACCCAACGGACGGCGGCCTGGCGCGCCGCGTCGAGGAGTT
CCTGGCCAAGGTAGGCCTCCGCACGCTGCCCGGCGCCGTCGCCGTTCTGCGCTCCTGCGA
GGGGCTCCTCCCGGCCGCCGAGGAGATCGGCGTCGTGCAGCGATCAGCTGATGCTATCGC
GCTCAGGATCTGCAACGAGGTGCTGTTCCCGACGAGGTCGCCGCCCGAGTGGTGGACGGC
GGAGCTCGCCGCCCTCTCGCCGGCGTCGTTCCACAAGGTCATCACGGCGCTGCGCTGCCG
CCGCGCTGAACCCGAGGTGCTTGTCGCTGCGGCGACCGCTTACGCTGAGCTCTTGCTGGC
CGAAGTGCTCGCCGCCGACGGCCATGCTGCTGATCACTCCGGGATGCACCGCGCGCTTGT
CGAGTCCGTGGTGGCCGTGCTCCCTTCCACGGACGACGCGCCCCTCCCCGCCGCGTTCCT
CTGCCACCTCCTCCACGTCGCCATCACCATCGGCGCATCCGCCAAGACGTGCCACGACCT
GGAGCTCCGCGTGGCGGCGGTGCTCGACCAGGCCACCGCGGGCGACCTGCTGACCGTCGC
GCTCGACGGCGCCGGTGAGCGCGTCCAGAACGTCGACGCCGTGCGCCGCATCATCACCGC
CTTCGTGGAGCGCGACTCTGCGGCGTCATCGGGCGGCGGCGCGAACGGCCGGAACCGGAG
GGCGTCCCTGAGCGGAGCCGGGGCGCTGCAGGGCGGCGGTGGCGCGATGCAGACGGTGGC
GAAGACCGTGGACGAGGTCGCGGCGGAGATCGCGACGGAGGAGTCGCTGCCGATCTCCAA
GTTCGTGGGGCTCGCCGGCGCGGTGCCGAAGGAGGCGCGCGCGACGCACGACTGCCTGTA
CCGCGCCGTCGACATCTACCTGAAGGCGCACCCGGCGCTGGAGGAGATGGAGAGGGAGAA
GGTGTGCAGCGTGATGGACCCGCTGAAGCTGTCGTACCAGGGTCGCCTCCACGCGTCACA
GAACAATCGGCTCCCGCTGCAGGCCGTGCTGAGCGCGCTCTACTACGACCGGCTCAAGCT
CCGCAGCGGAGACGAGGGCGGCGGCGGGTGGGACGCGTATGGGAATGGCGTGATGAGGTC
GTCGGCGGCGGGGTCGGCGAGGAAGCAGGCGAAGGAGGAGGCGTCGCTGGCGAGGGAGAA
CGAGGCGCTGCGGTCGGAGCTGGCGCGGATGCGGGCGTACGTGTCGGGGATGCAGCAGCA
GAGCAAGGGGTCGTCGTCGTCGAGGGGGAAGAAGGGCTCGTGGTTGCGGACGTTGAGCCG
GCTGAACCCGTTCAAGGCCGGCATCTGGGGCAAGGACACGTCGGGCATCGTCGACGGGAA
GACGGACGCCATGAATTCCGTCAAGTCCAAGAGGAGGAGGTTCTCCATTAGCTAGGCTAG
CTTAGTGTTGAGATGATCCATGTCATCTCGTGCTAGCTACATATATGCGTTGTCAATGAC
TGTATATTGATTGATTGGTTATTCGCAAGAAACATGACTGTTCTTGTGTAGTCTACTGTA
AATTGTAAGTTTGTGTCCGCAAAAACGAACTAATGTTTGGATTGGATTGGTCAAAAGTC