Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os11t0114800-00
CDS Infomation	cds chromosome:IRGSP-1.0:11:671595:673208:1 gene:Os11g0114800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os11t0114800-00)
Sequence	ATGCGCGTGCTCCTGCTCGTCTCCGATGATGGATTATTGGATTTTGCTCGGCTCCTCGGC GGCGGCAGGAAGACGAAGAGGAAGAGGAGACGACGCTGTCTCTGCCTGCGGCTTCAAGCC ACGGTTTCCTCCTTTCCCCCTGCGACCATTCGCTGGCCTCGTGGGCTTTTTCTTAGCCCA CTAACCAAACCACGGCCCACTAGGCGAGCCCACCAATGCGTTCCACATCCACGACCACGA CTGCCTCCTACCACCGCCTCCTGCGCCGCCGGCGGTCACCAGCTCCACGCGCTGCTCGCC AAGCTCGGCCTGCTCCACCACCCTGAATTCCTCTCCGCTCTCCTCTCTCGCATCCCGCCT TCGCCGTCGGCGCTCTCCCTTCTGCTCGAGGCCTCCCCGGCCGTCCTCTCGCCGTCGCTC GTCTGCCCGGTCATCGTCGCCTTCTCCTCCTCTCCGGCCCCGTCGTCCGCGCTCATCCTC TTCAACCATGCCTCCTCGTGCTCCCTCCCCACCCCGCTACCCACCTTCCCTGCGTTACTC AAATCCTGCGCTCGCGCATTCAACCGCAGCTCTCGCGCCGGTGTCGCGTCGGTCTTCGTC TCCAAGGGGATGGAGCTGCATTGCCGTGTCTTGAAGCTTGGCTGCGGGAAGGATCGATAC GTGCGGAATGCGCTCGTCTCCATGTATGGCAAGTTCGGTCGCCTCGGGGATGCACGGAAG GCGTTCGATGAAATGCCTGACAAGAACGCCGTCTCGTGGAATGCGTTGGTCGGGGCTCAT CGTGCCGCTGCAGACTGGATGGGTGCAGAGCGCGTCTCTCAAGCCATGCCAGAGAGGAAC TTGTCATGGTGGAATGCTGAGATCGCACGAAATGTTAGTATCGGGTATATGGATGAGGCA TCAAGGCTTTTCAGGGAAATGCCACAGAGGGATGTTGTTTCATTGAACTCTTTGATAAGT GGCTACACAAAGCTCGGCAAATATACCAAAGCATTGGAGATTTTTCAAGAAATGAAGGAG AATGCCATTGAACCTACGGAGCTTACACTTGTATTAATCCTTGGGGCTTGTGCAAAGGAT GGCAAGCTGGAGCTGGGGACAGACATCCACATAAACCTTCAGAGCAAGGGCATTGTATCT GATGGCTTGGTTGGCAATGCACTCATTGATATGTATGCAAAATGTGGGAGGTTGGATCTC GCCAAGAAGGTCTTTGACAGAATGTCTATGAGGGATATTACATGCTGGAATGCGATGATC ATTGGTTTCTCAGTACATGGCTGCTCATATGAGGCTCTAGAGCTCTTTGATTCGATGAAA ATTGAGCCAAATCCTGTCACATTTTTGGGTGTCTTGACTGCCTGCAGCCATGGTGGCCTA GTGAATGAGGGGAGGAAATATTTTAATAGCATGATTGAGGACTACAGAATTGTTCCTGAT GTTAAGCATTATGGCTGCATGATTGATATGCTTTGCCGCTATGGAAGAATTGAAGAAGCT TATCTGATGATTAAAGAAAACCCTTCAACAGCAAACTCTGTTCTGTGGAAGATGTTGTTG GCAGCTTGCCGAGTGCATGGGCACATCGATCTTGCTTACAAGTTTTTTCATTAA

Peptide Sequence

PEP ID	Os11t0114800-00
PEP Infomation	pep chromosome:IRGSP-1.0:11:671595:673208:1 gene:Os11g0114800 transcript:Os11t0114800-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os11t0114800-00)
Sequence	MRVLLLVSDDGLLDFARLLGGGRKTKRKRRRRCLCLRLQATVSSFPPATIRWPRGLFLSP LTKPRPTRRAHQCVPHPRPRLPPTTASCAAGGHQLHALLAKLGLLHHPEFLSALLSRIPP SPSALSLLLEASPAVLSPSLVCPVIVAFSSSPAPSSALILFNHASSCSLPTPLPTFPALL KSCARAFNRSSRAGVASVFVSKGMELHCRVLKLGCGKDRYVRNALVSMYGKFGRLGDARK AFDEMPDKNAVSWNALVGAHRAAADWMGAERVSQAMPERNLSWWNAEIARNVSIGYMDEA SRLFREMPQRDVVSLNSLISGYTKLGKYTKALEIFQEMKENAIEPTELTLVLILGACAKD GKLELGTDIHINLQSKGIVSDGLVGNALIDMYAKCGRLDLAKKVFDRMSMRDITCWNAMI IGFSVHGCSYEALELFDSMKIEPNPVTFLGVLTACSHGGLVNEGRKYFNSMIEDYRIVPD VKHYGCMIDMLCRYGRIEEAYLMIKENPSTANSVLWKMLLAACRVHGHIDLAYKFFH

Transcript Sequence

Transcript ID	Os11t0114800-00
Transcript Infomation	cdna chromosome:IRGSP-1.0:11:671595:673208:1 gene:Os11g0114800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os11t0114800-00)
Sequence	ATGCGCGTGCTCCTGCTCGTCTCCGATGATGGATTATTGGATTTTGCTCGGCTCCTCGGC GGCGGCAGGAAGACGAAGAGGAAGAGGAGACGACGCTGTCTCTGCCTGCGGCTTCAAGCC ACGGTTTCCTCCTTTCCCCCTGCGACCATTCGCTGGCCTCGTGGGCTTTTTCTTAGCCCA CTAACCAAACCACGGCCCACTAGGCGAGCCCACCAATGCGTTCCACATCCACGACCACGA CTGCCTCCTACCACCGCCTCCTGCGCCGCCGGCGGTCACCAGCTCCACGCGCTGCTCGCC AAGCTCGGCCTGCTCCACCACCCTGAATTCCTCTCCGCTCTCCTCTCTCGCATCCCGCCT TCGCCGTCGGCGCTCTCCCTTCTGCTCGAGGCCTCCCCGGCCGTCCTCTCGCCGTCGCTC GTCTGCCCGGTCATCGTCGCCTTCTCCTCCTCTCCGGCCCCGTCGTCCGCGCTCATCCTC TTCAACCATGCCTCCTCGTGCTCCCTCCCCACCCCGCTACCCACCTTCCCTGCGTTACTC AAATCCTGCGCTCGCGCATTCAACCGCAGCTCTCGCGCCGGTGTCGCGTCGGTCTTCGTC TCCAAGGGGATGGAGCTGCATTGCCGTGTCTTGAAGCTTGGCTGCGGGAAGGATCGATAC GTGCGGAATGCGCTCGTCTCCATGTATGGCAAGTTCGGTCGCCTCGGGGATGCACGGAAG GCGTTCGATGAAATGCCTGACAAGAACGCCGTCTCGTGGAATGCGTTGGTCGGGGCTCAT CGTGCCGCTGCAGACTGGATGGGTGCAGAGCGCGTCTCTCAAGCCATGCCAGAGAGGAAC TTGTCATGGTGGAATGCTGAGATCGCACGAAATGTTAGTATCGGGTATATGGATGAGGCA TCAAGGCTTTTCAGGGAAATGCCACAGAGGGATGTTGTTTCATTGAACTCTTTGATAAGT GGCTACACAAAGCTCGGCAAATATACCAAAGCATTGGAGATTTTTCAAGAAATGAAGGAG AATGCCATTGAACCTACGGAGCTTACACTTGTATTAATCCTTGGGGCTTGTGCAAAGGAT GGCAAGCTGGAGCTGGGGACAGACATCCACATAAACCTTCAGAGCAAGGGCATTGTATCT GATGGCTTGGTTGGCAATGCACTCATTGATATGTATGCAAAATGTGGGAGGTTGGATCTC GCCAAGAAGGTCTTTGACAGAATGTCTATGAGGGATATTACATGCTGGAATGCGATGATC ATTGGTTTCTCAGTACATGGCTGCTCATATGAGGCTCTAGAGCTCTTTGATTCGATGAAA ATTGAGCCAAATCCTGTCACATTTTTGGGTGTCTTGACTGCCTGCAGCCATGGTGGCCTA GTGAATGAGGGGAGGAAATATTTTAATAGCATGATTGAGGACTACAGAATTGTTCCTGAT GTTAAGCATTATGGCTGCATGATTGATATGCTTTGCCGCTATGGAAGAATTGAAGAAGCT TATCTGATGATTAAAGAAAACCCTTCAACAGCAAACTCTGTTCTGTGGAAGATGTTGTTG GCAGCTTGCCGAGTGCATGGGCACATCGATCTTGCTTACAAGTTTTTTCATTAA