Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0114700-04
CDS Infomation

cds chromosome:IRGSP-1.0:11:663975:671285:-1 gene:Os11g0114700 gene_biotype:protein_coding transcript_biotype:protein_coding description:PAP/25A core domain containing protein. (Os11t0114700-01);PAP/25A core domain containing protein. (Os11t0114700-02);Similar to cDNA, clone: J090093C10, full insert sequence. (Os11t0114700-03);PAP/25A-associated domain containing protein. (Os11t0114700-04)
Sequence

GACAACCAGGGCTGCTCGCCGGCGCTCGAGCCCGTGCCCACGCCGCCCAACCCCGACCCC
TCATCCATCTCGCCGGAGGCCTGGGATCCCCTCGAGGCCGCCGCCGGAGCCGTCGTCGCC
CGGATCCAGCCCAACCCGCCCTCCGAGGACCGCCGCGCCGCCGTCATAGCCTACGTCCAG
CACCTCCTCAGGTGCACCGTTGGCTGCCAGGTCTTTCCATTTGGATCTGTTCCGTTGAAA
ACTTATCTTCCTGATGGAGATATTGATTTGACTGCCTTTGGCCATTCAAGTGATGAAATT
TTAGCAAAACAAGTACAGGCTGTTTTAGAATCAGAAGAGGCAAGGAAAGACGCTGAATTT
GAAGTCAAGGATGTCCAATATATTCATGCAGAGGTCAAGTTGGTGAAATGCATTGTTCAA
AACATCATTGTAGACATCTCATTCAATCAGTTTGGTGGACTGTGTACCCTTTGTTTTCTC
GAGAAGGTTGATCAAAAATTTGAAAAATACCACCTTTTCAAGAGAAGTATAATGCTGATA
AAAGCTTGGTGTTATTATGAAAGCCGCATTCTTGGTGCTCACCATGGATTAATTTCTACC
TATGCATTGGAGATATTGGTGTTATATATTTTCCATCTCTTCCATGGAACATTGGATGGT
CCACTAGCTGTTCTCTATAGGTTTCTGGACTACTATAGCAAATTTGACTGGGACAATAAG
GGTATAAGCTTGTATGGCCCTATTTCCTTGTCTTCCCTGCCTGAGCTAGTTACTGACTCT
CCAGACACTGTTAATGATGATTTTACTATGCGAGAGGACTTTCTCAAGGAATGTGCGCAG
TGGTTTACTGTACTTCCTAGAAACTCTGAGAAAAATACTCAGGTCTTTCCCCGAAAATTT
TTCAACATAGTGGATCCATTGAAGCAGAGTAACAATCTAGGGCGCAGTGTCAGCAAAGGT
AACTTCCTCCGGATACGCAGTGCATTTGATTTTGGTGCCCGGAAGCTTGGGAAGATTATT
CAAGTGCCTGACAATTTTACTATGGATGAAGTGAATCAATTCTTCAGGAACACATTGAAG
AGACACTGCAGTAGGGTAAGGCCAGATGTGCAAGAAATAGCTCTGGACTTCAATGGTGAA
AGAGCCGACAACGATAGTTCGCCTTTATACAGTAATAATTCCTTTGGTGATCTATCTGAT
GAGTTCAATAACATCAGCATTTCAGATTCCAGCAACCATGGGTCACTAAGGCAAAATGGA
TGGAATTATGTGGCTGAGAACAAGGAAAGGAAGTCTGTTTCTGGTGGCTTGCTGGCAAGC
AAAGCAACAAATCCTGCAGCTACTAATTCAACTGGTATGACGAATGGCAGTGACTCTTGT
GAGCCCGCATCACCATCAATTACCGGAGCACATAGCTTGCCATCTGAGGAAGGTCATGAC
GCACTGGATCTCTTTAATGAGTCAGAAAGTGGTACGAAAGCTGGCATAAAGTATGGCACA
AACCCATCACACCATGGAATGTCAACAGTGAGTTATGCAGGCAGATCCCACCAGTCCTTT
GAAGAGGTGGATAATGATGATAGAGGTACCATCGATAGCAATTGGTCAGATCTCACTGGA
GACTACACAACAAATTTTAATAATCTTCTCTATGCTCAAGGGTTCCACCAAGATTATCCA
ATGAACCAATATTATCCATTTGGTCCAGTGTACTATCCAATACCCTCCCCTCCACCTGCA
CGATATCAGAATAGGCGATCATCAAATGGTCATAGCAGAAATAATGTGTATGGATATGCT
GGTACAAATGGAATAGGCCCTGCTCCTTGTCCACCAGGTTATTTAATTATGAGGCCATAT
AGTCAAATTGATGATTCAAATCGAGCTCGTGGAACTGGCACATACTTCCCTAACCCAAAC
TTGTCCAAAGACAGATCACCTTCTGGACGAGGCGGAAGGGGAAAAACTCATTTCCTGCCA
CATAACCATCAAAGACCACACCACTACGGTAGAGCTGATATGTCAGCAGATTTGACTCCT
TCGGAGGAATTGAGACATATTTATGATCCTGATGCAAATGACTTGGGAATCCCCTCTTCA
CTGCGCATATCAATACCTTCTCCATCTTCGGAAGCTCCAAGGGAAATTGTGCATGGCAAT
GGTTTTATTCAGCCTCCAGCTAAGAAACTTGAGTTTGGGACCTTGGGAGCATTGCCTTTG
GAAGTTACATCCCAAGAGCTTGGTATTAACAGATTGAATACTGCTTCCGACAGCCAACCT
TCAGCGTCTGCAAGCCCTATGTCTCTGGCAAATAATCCTGGAATTAGTTCTAATCAAATG
AGGAATGCTCAGCCATATCATCTCAAGGACAACGGTGATTTCCCACCGCTATCTAGTTGA

Peptide Sequence

PEP ID

Os11t0114700-04
PEP Infomation

pep chromosome:IRGSP-1.0:11:663975:671285:-1 gene:Os11g0114700 transcript:Os11t0114700-04 gene_biotype:protein_coding transcript_biotype:protein_coding description:PAP/25A core domain containing protein. (Os11t0114700-01);PAP/25A core domain containing protein. (Os11t0114700-02);Similar to cDNA, clone: J090093C10, full insert sequence. (Os11t0114700-03);PAP/25A-associated domain containing protein. (Os11t0114700-04)
Sequence

DNQGCSPALEPVPTPPNPDPSSISPEAWDPLEAAAGAVVARIQPNPPSEDRRAAVIAYVQ
HLLRCTVGCQVFPFGSVPLKTYLPDGDIDLTAFGHSSDEILAKQVQAVLESEEARKDAEF
EVKDVQYIHAEVKLVKCIVQNIIVDISFNQFGGLCTLCFLEKVDQKFEKYHLFKRSIMLI
KAWCYYESRILGAHHGLISTYALEILVLYIFHLFHGTLDGPLAVLYRFLDYYSKFDWDNK
GISLYGPISLSSLPELVTDSPDTVNDDFTMREDFLKECAQWFTVLPRNSEKNTQVFPRKF
FNIVDPLKQSNNLGRSVSKGNFLRIRSAFDFGARKLGKIIQVPDNFTMDEVNQFFRNTLK
RHCSRVRPDVQEIALDFNGERADNDSSPLYSNNSFGDLSDEFNNISISDSSNHGSLRQNG
WNYVAENKERKSVSGGLLASKATNPAATNSTGMTNGSDSCEPASPSITGAHSLPSEEGHD
ALDLFNESESGTKAGIKYGTNPSHHGMSTVSYAGRSHQSFEEVDNDDRGTIDSNWSDLTG
DYTTNFNNLLYAQGFHQDYPMNQYYPFGPVYYPIPSPPPARYQNRRSSNGHSRNNVYGYA
GTNGIGPAPCPPGYLIMRPYSQIDDSNRARGTGTYFPNPNLSKDRSPSGRGGRGKTHFLP
HNHQRPHHYGRADMSADLTPSEELRHIYDPDANDLGIPSSLRISIPSPSSEAPREIVHGN
GFIQPPAKKLEFGTLGALPLEVTSQELGINRLNTASDSQPSASASPMSLANNPGISSNQM
RNAQPYHLKDNGDFPPLSS

Transcript Sequence

Transcript ID

Os11t0114700-04
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:663975:671285:-1 gene:Os11g0114700 gene_biotype:protein_coding transcript_biotype:protein_coding description:PAP/25A core domain containing protein. (Os11t0114700-01);PAP/25A core domain containing protein. (Os11t0114700-02);Similar to cDNA, clone: J090093C10, full insert sequence. (Os11t0114700-03);PAP/25A-associated domain containing protein. (Os11t0114700-04)
Sequence

TCGACAACCAGGGCTGCTCGCCGGCGCTCGAGCCCGTGCCCACGCCGCCCAACCCCGACC
CCTCATCCATCTCGCCGGAGGCCTGGGATCCCCTCGAGGCCGCCGCCGGAGCCGTCGTCG
CCCGGATCCAGCCCAACCCGCCCTCCGAGGACCGCCGCGCCGCCGTCATAGCCTACGTCC
AGCACCTCCTCAGGTGCACCGTTGGCTGCCAGGTCTTTCCATTTGGATCTGTTCCGTTGA
AAACTTATCTTCCTGATGGAGATATTGATTTGACTGCCTTTGGCCATTCAAGTGATGAAA
TTTTAGCAAAACAAGTACAGGCTGTTTTAGAATCAGAAGAGGCAAGGAAAGACGCTGAAT
TTGAAGTCAAGGATGTCCAATATATTCATGCAGAGGTCAAGTTGGTGAAATGCATTGTTC
AAAACATCATTGTAGACATCTCATTCAATCAGTTTGGTGGACTGTGTACCCTTTGTTTTC
TCGAGAAGGTTGATCAAAAATTTGAAAAATACCACCTTTTCAAGAGAAGTATAATGCTGA
TAAAAGCTTGGTGTTATTATGAAAGCCGCATTCTTGGTGCTCACCATGGATTAATTTCTA
CCTATGCATTGGAGATATTGGTGTTATATATTTTCCATCTCTTCCATGGAACATTGGATG
GTCCACTAGCTGTTCTCTATAGGTTTCTGGACTACTATAGCAAATTTGACTGGGACAATA
AGGGTATAAGCTTGTATGGCCCTATTTCCTTGTCTTCCCTGCCTGAGCTAGTTACTGACT
CTCCAGACACTGTTAATGATGATTTTACTATGCGAGAGGACTTTCTCAAGGAATGTGCGC
AGTGGTTTACTGTACTTCCTAGAAACTCTGAGAAAAATACTCAGGTCTTTCCCCGAAAAT
TTTTCAACATAGTGGATCCATTGAAGCAGAGTAACAATCTAGGGCGCAGTGTCAGCAAAG
GTAACTTCCTCCGGATACGCAGTGCATTTGATTTTGGTGCCCGGAAGCTTGGGAAGATTA
TTCAAGTGCCTGACAATTTTACTATGGATGAAGTGAATCAATTCTTCAGGAACACATTGA
AGAGACACTGCAGTAGGGTAAGGCCAGATGTGCAAGAAATAGCTCTGGACTTCAATGGTG
AAAGAGCCGACAACGATAGTTCGCCTTTATACAGTAATAATTCCTTTGGTGATCTATCTG
ATGAGTTCAATAACATCAGCATTTCAGATTCCAGCAACCATGGGTCACTAAGGCAAAATG
GATGGAATTATGTGGCTGAGAACAAGGAAAGGAAGTCTGTTTCTGGTGGCTTGCTGGCAA
GCAAAGCAACAAATCCTGCAGCTACTAATTCAACTGGTATGACGAATGGCAGTGACTCTT
GTGAGCCCGCATCACCATCAATTACCGGAGCACATAGCTTGCCATCTGAGGAAGGTCATG
ACGCACTGGATCTCTTTAATGAGTCAGAAAGTGGTACGAAAGCTGGCATAAAGTATGGCA
CAAACCCATCACACCATGGAATGTCAACAGTGAGTTATGCAGGCAGATCCCACCAGTCCT
TTGAAGAGGTGGATAATGATGATAGAGGTACCATCGATAGCAATTGGTCAGATCTCACTG
GAGACTACACAACAAATTTTAATAATCTTCTCTATGCTCAAGGGTTCCACCAAGATTATC
CAATGAACCAATATTATCCATTTGGTCCAGTGTACTATCCAATACCCTCCCCTCCACCTG
CACGATATCAGAATAGGCGATCATCAAATGGTCATAGCAGAAATAATGTGTATGGATATG
CTGGTACAAATGGAATAGGCCCTGCTCCTTGTCCACCAGGTTATTTAATTATGAGGCCAT
ATAGTCAAATTGATGATTCAAATCGAGCTCGTGGAACTGGCACATACTTCCCTAACCCAA
ACTTGTCCAAAGACAGATCACCTTCTGGACGAGGCGGAAGGGGAAAAACTCATTTCCTGC
CACATAACCATCAAAGACCACACCACTACGGTAGAGCTGATATGTCAGCAGATTTGACTC
CTTCGGAGGAATTGAGACATATTTATGATCCTGATGCAAATGACTTGGGAATCCCCTCTT
CACTGCGCATATCAATACCTTCTCCATCTTCGGAAGCTCCAAGGGAAATTGTGCATGGCA
ATGGTTTTATTCAGCCTCCAGCTAAGAAACTTGAGTTTGGGACCTTGGGAGCATTGCCTT
TGGAAGTTACATCCCAAGAGCTTGGTATTAACAGATTGAATACTGCTTCCGACAGCCAAC
CTTCAGCGTCTGCAAGCCCTATGTCTCTGGCAAATAATCCTGGAATTAGTTCTAATCAAA
TGAGGAATGCTCAGCCATATCATCTCAAGGACAACGGTGATTTCCCACCGCTATCTAGTT
GATGCCATATAGTTCATTGCATATCAGAGACAACTTGGTCCAAGAAAGATACTGATAAAT
GGTGCGAGCGCTTGGTGCAACAATAGCAGGGGTTGTTCCGCAAGACAAACATCATCCATC
ATGTACATCCTATCATTAACTTCACATTCTCCTATCTTCAATTCACCCTTGCTGTTGCTT
TCCAAAAAAGAAAAAAAAAAAGCCCAGAAGGCTGATGCATCGCAGCTTGCTCTGCCATAA
CATTCCCTGCAAAGGAAATATGGAGGAAAGATAGAAGCACAATGTAGCTACTTATGTTAT
CTTCACCTTTGCCCCCTTGAAGAGGGAACAAGTGTGGTGAAGTCAAGAAATGCTAGAAAG
AGGTGAGCTGTGTCTTGCTCTGTTGTTTTGACCTCATGAGCATTCCAGTTACTGGAGGGC
TCATTGAGTGTGCTCTGTTTTGGTTTGGAGAGGCCTTCTGTTGAAAGGCCCCACTGTTTG
AAGTAACATTTGCTGCCTCAAGCAATGGGTAGTTATAGGGGATAGATATGTACGAAACTT
TCACTAGATTTACTGTCTTCATAGAAGCAGTTTAGTTAGTCTATACTAGCTCAGAGTAAA
AATGATCCTTTTACTTTGCCTGTTGTGCTTCACATGTCTTTTTTTTTTTGTAACTAATTT
GACTTGTAACATAGTTTTGCTCTGCTGTTGTTAGCTCGGCTCCAGGTTAAGAGAAAGGGG
TATGATTTTGAGTAACACAACC