Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0111900-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:558812:560658:-1 gene:Os11g0111900 gene_biotype:protein_coding transcript_biotype:protein_coding description:BTB domain containing protein. (Os11t0111900-01)
Sequence

ATGGATTGCTGCGTGTGCAGTCCCATGGCGTCCATGTACAGGCTTCCAAGGAACGCCATC
TGCGCTGCGTGCTATGAAGGTGCCAAGGCCATCATCGCCTTCTTCAACGACGACGACGAC
GAGCACGCCGATGCTGATCAAGGCTCGGTGAAGCCCAGCAGATTGACAAAGCTCAATAGC
ACAATCAAGGGATTGAGAGATGCGTGGGAGGAGGTGAAGCAGATGCGATGCAGAGAGGAG
GAGACCAAGCAGAGGGCATCGTTTCTCCAGGAAGGCTTCGCGGCGGCGTGGAAGGACGGC
ATCCACACCGACATCGCCATCAGGCCTGGAACTGGGCCTCCAATCCAAGCCCACAAGGCC
ATCCTTGCGACCAGGTCGGAGGTGTTCCGGCACATCCTCGCCGGCGACGACGACTGCAAG
GCCCCCGCCGGCGACTCTCTGTCGCTACCGGAGCTGACCCACGACGAGCTCTCCCACCTC
CTCGCCTTCCTCTACACGGGCTCCCTGGCGACGTGCGCGGAGGAGCGGCACCTGCACGCG
CTGCTGGTCGCCGGCGACAAGTACGACGTGCCGTTCCTCCGGCGAGCTTGCGAGGCGCGG
CTGGCGGCGGGGGTGGAGGCGGGCAACGTGCTGCGGACGCTGGAGGTGGCGGAGCTGAGC
TCGAGCGCGGCGCTGAAGGAGCGCGCCATGGGGACGGTGGTGGAGCACGCGGAGGAGGTG
GTGTTCTCGCCGGAGTACGAGGAGTTCGCCGTCAGGAACGCCGCCCTCTGCGTCCAGATC
ACCCGCACACTTCTCGCCAATAAAAGCTTACCCGCCAAGACGCCTTAA

Peptide Sequence

PEP ID

Os11t0111900-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:558812:560658:-1 gene:Os11g0111900 transcript:Os11t0111900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:BTB domain containing protein. (Os11t0111900-01)
Sequence

MDCCVCSPMASMYRLPRNAICAACYEGAKAIIAFFNDDDDEHADADQGSVKPSRLTKLNS
TIKGLRDAWEEVKQMRCREEETKQRASFLQEGFAAAWKDGIHTDIAIRPGTGPPIQAHKA
ILATRSEVFRHILAGDDDCKAPAGDSLSLPELTHDELSHLLAFLYTGSLATCAEERHLHA
LLVAGDKYDVPFLRRACEARLAAGVEAGNVLRTLEVAELSSSAALKERAMGTVVEHAEEV
VFSPEYEEFAVRNAALCVQITRTLLANKSLPAKTP

Transcript Sequence

Transcript ID

Os11t0111900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:558812:560658:-1 gene:Os11g0111900 gene_biotype:protein_coding transcript_biotype:protein_coding description:BTB domain containing protein. (Os11t0111900-01)
Sequence

AATGCTAGCGTTGCTGTTCACGTCGTTGCCTAGCCACAAGGAGAAGGAAGAAGGAAAAGA
AGGCAGAAGGCAGCAGCAGGAGCAGCAGGAGAAGGAGAAGGCGAGAAGAAACAATGGATT
GCTGCGTGTGCAGTCCCATGGCGTCCATGTACAGGCTTCCAAGGAACGCCATCTGCGCTG
CGTGCTATGAAGGTGCCAAGGCCATCATCGCCTTCTTCAACGACGACGACGACGAGCACG
CCGATGCTGATCAAGGCTCGGTGAAGCCCAGCAGATTGACAAAGCTCAATAGCACAATCA
AGGGATTGAGAGATGCGTGGGAGGAGGTGAAGCAGATGCGATGCAGAGAGGAGGAGACCA
AGCAGAGGGCATCGTTTCTCCAGGAAGGCTTCGCGGCGGCGTGGAAGGACGGCATCCACA
CCGACATCGCCATCAGGCCTGGAACTGGGCCTCCAATCCAAGCCCACAAGGCCATCCTTG
CGACCAGGTCGGAGGTGTTCCGGCACATCCTCGCCGGCGACGACGACTGCAAGGCCCCCG
CCGGCGACTCTCTGTCGCTACCGGAGCTGACCCACGACGAGCTCTCCCACCTCCTCGCCT
TCCTCTACACGGGCTCCCTGGCGACGTGCGCGGAGGAGCGGCACCTGCACGCGCTGCTGG
TCGCCGGCGACAAGTACGACGTGCCGTTCCTCCGGCGAGCTTGCGAGGCGCGGCTGGCGG
CGGGGGTGGAGGCGGGCAACGTGCTGCGGACGCTGGAGGTGGCGGAGCTGAGCTCGAGCG
CGGCGCTGAAGGAGCGCGCCATGGGGACGGTGGTGGAGCACGCGGAGGAGGTGGTGTTCT
CGCCGGAGTACGAGGAGTTCGCCGTCAGGAACGCCGCCCTCTGCGTCCAGATCACCCGCA
CACTTCTCGCCAATAAAAGCTTACCCGCCAAGACGCCTTAATATTCTTTTTTTTTCCTTC
GTTGATTTAGAATTTAGTTAGACGACGTGCGATGTATACGTGTAAATGATAGTACATGCA
TCTCTGGAAGATTAATGTGATCAATATATGCAATTTATATTAGTTTCTTTGCACGAAT