Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os11t0109800-00
CDS Infomation	cds chromosome:IRGSP-1.0:11:454476:456860:1 gene:Os11g0109800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os11t0109800-00)
Sequence	ATGAGATCGAGCAGCGACGGCGGCATGTTTCCTTGGACTCACCGCCGCCACCTCCTCCAA TCGCATTCTCCTCTCCACCTGCTGCATTACTGCACCTCCTCCACCTCCATCTCCAGGGAT CCCTTCGCCATCGCCTCCATGGCCTCCTCCTCCTCCTCCTCTTCACACCTCCACGCGCAC TCCCTTAAGCTGGGCACGCTCGCTCACACCTTCAACATGAATCACCTCCTCATCTACTAC GCTAGGCGGGGCCTTCTCGACTCAGCACTCAAGGTGTTCGACGAAATGCCGCAAAGGAAC CTCGTCTCCTGGACAGCCATGGTCTCTGCCTCAACGGGCAATGGCGCGCCCCACCTGGGC TTTCGTTTCTTCGTTTCCATGATCAGGAGCGGCTTCTGCCCCAACGAGTTCTCGCTCGCA ACCATGCTCACTGCCTGCCACTCCATGGTGGCCCATTCCTCCAATAAGCTCCTCATCGCC CTTTCGCTCCACGGTGTTGCCGTCAGAGCTGGCCTGGATAGCAATCCTTTTGTGGGGAGC TCTCTGCTGCTCATGTACGCAAAGCATGGCCGCATTGCTGCTGCACAGCGTGCATTCGCA CATATCAGGAACAAAGATTTGACGTGCTGGAATGCCATGCTCGAAGGATATGTTTTGAAT GGTTTTGGGCATCATGCCATTCGTACGGTGCTCCTGATGCATCATTCTGGGCTTGCACCT GACCGGTACACCTATATTTCTGCTGTTAAGGCTTGTTCAATCAGTGCGCAGTGGGATCTT GGGCGACAGCTTCACTGTCTTGTCATCCACAGCATGCTCGAGTCCAATACCTCGGTCATG AATTCCCTTGTTGATATGTATTTCAGAGCCAGACAGAAGGAAACTGCTGCTTCTGTCTTT CGCAAGATTAGACAAAAAGACACCGTGTCTTGGAATACCATGATTTCAGGTTTTGCGCAT GATGAAGACGACAAGGCAGTTTTTGGCTGCTTGATTGACATGTCACGAATCGGATGTAAA CCTAATGAGGTTACTTTCTCTGTCTTGTTGAGGCTGAGTGGTGCTAAAGAGAATGAATCA TTGGGCCTTCAGATCGTTGCCCTTGCCTACCGTCATGGCTATACTGACAATGTTCTTGTA GCAAATGCAGTAATCAACATGCTATCCAGATGTGGATTGCTCAACCGTGCATATGGCTTC TTCTGTAGTCTCACATCCACAAACATTGTGACATGGAACGAGATGATTGCAGGTTATGGT CTCTTCAGTCACTCTGAAGAAACAATGAAGCTCTTCCGCAGTTTGGTTTGCTTTGGAGAA AGACCTGATGAGTTCACCTACTCAGCTGTTCTGTCTGCCTTCCAGGAAGCTCAAGGTGCA AGGGATCATGAGCAAATCCACGCAACTATTCTGAAACAAGGTTTTGCCTCCTGTCAGTTC GTGTCCACTTCACTGATCAAGGCAAATGTAGCAGCGTTTGGGTCAGTTCAGATTTCACTA AAAATCATCGAGGACGCTGGCAAGATGGAGCTGGTGTCATGGGGAGTCGTTATCTCAGCA TTCCTGAAGCATGGCCTGAACGATGAGGTCATTTTCCTTTTCAACTTGTTTAGAGGTGAC TCCACCAACAAGCCTGATGAGTTCATCCTGGCAACCGTCCTAAATGCCTGTGCAAATGCT GCATTGATCAGGCACTGCAGATGCATCCATTCGCTTGTTCTCAAGACAGGTCATTCCAAG CACTTCTGCGTAGCTAGCGCTGTTGTTGATGCCTACGCGAAATGTGGTGAGATTACCTCT GCAGAGAGCGCTTTCACCGTTGTTTCATCAGGAACCGACGATGCCATCCTGTACAACACC ATGCTGACAGCTTATGCCAACCATGGTTTGATCCACGAAGCTCTCAACCTCTACGAAGAG ATGACAAAGGCTAAATTGAGTCCAACACCAGCCACATTCGTTGCCATTCTGTCAGCCTGC AGCCATTTGGGGCTAGTCGAGCAGGGGAAGCTTGTGTTCAGCACCATGCTGTCTGCGTAT GGCATGCATCCAGCAAGAGCCAACTACGCCTGCCTGGTTGATCTCCTGGCAAGAAAGGGG CTACTCGACGAGGCGAAGGGTGTGATCGATGCAATGCCGTTCCAACCATGGCCTGCAGTT TGGAGGTCGCTGGTGATCGGTTGCCGGATACATGGGAACAAGCAACTTGGCGTGCTTGCG GCAGAGCAGATCCTGAGAATGGCGCCGAGCAGCGATGGCGCTTATATTTCGCTGTCAAAC GTGTATGCTGACGATGGAGAGTGGCAGTCTGCAGAGGAGACCAGGAGGAGGATGGTTCAG AATCACGTTCAGAAGTTGCAAGGGTACAGCAGGATTGAGATGTAG

Peptide Sequence

PEP ID	Os11t0109800-00
PEP Infomation	pep chromosome:IRGSP-1.0:11:454476:456860:1 gene:Os11g0109800 transcript:Os11t0109800-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os11t0109800-00)
Sequence	MRSSSDGGMFPWTHRRHLLQSHSPLHLLHYCTSSTSISRDPFAIASMASSSSSSSHLHAH SLKLGTLAHTFNMNHLLIYYARRGLLDSALKVFDEMPQRNLVSWTAMVSASTGNGAPHLG FRFFVSMIRSGFCPNEFSLATMLTACHSMVAHSSNKLLIALSLHGVAVRAGLDSNPFVGS SLLLMYAKHGRIAAAQRAFAHIRNKDLTCWNAMLEGYVLNGFGHHAIRTVLLMHHSGLAP DRYTYISAVKACSISAQWDLGRQLHCLVIHSMLESNTSVMNSLVDMYFRARQKETAASVF RKIRQKDTVSWNTMISGFAHDEDDKAVFGCLIDMSRIGCKPNEVTFSVLLRLSGAKENES LGLQIVALAYRHGYTDNVLVANAVINMLSRCGLLNRAYGFFCSLTSTNIVTWNEMIAGYG LFSHSEETMKLFRSLVCFGERPDEFTYSAVLSAFQEAQGARDHEQIHATILKQGFASCQF VSTSLIKANVAAFGSVQISLKIIEDAGKMELVSWGVVISAFLKHGLNDEVIFLFNLFRGD STNKPDEFILATVLNACANAALIRHCRCIHSLVLKTGHSKHFCVASAVVDAYAKCGEITS AESAFTVVSSGTDDAILYNTMLTAYANHGLIHEALNLYEEMTKAKLSPTPATFVAILSAC SHLGLVEQGKLVFSTMLSAYGMHPARANYACLVDLLARKGLLDEAKGVIDAMPFQPWPAV WRSLVIGCRIHGNKQLGVLAAEQILRMAPSSDGAYISLSNVYADDGEWQSAEETRRRMVQ NHVQKLQGYSRIEM

Transcript Sequence

Transcript ID	Os11t0109800-00
Transcript Infomation	cdna chromosome:IRGSP-1.0:11:454476:456860:1 gene:Os11g0109800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os11t0109800-00)
Sequence	ATGAGATCGAGCAGCGACGGCGGCATGTTTCCTTGGACTCACCGCCGCCACCTCCTCCAA TCGCATTCTCCTCTCCACCTGCTGCATTACTGCACCTCCTCCACCTCCATCTCCAGGGAT CCCTTCGCCATCGCCTCCATGGCCTCCTCCTCCTCCTCCTCTTCACACCTCCACGCGCAC TCCCTTAAGCTGGGCACGCTCGCTCACACCTTCAACATGAATCACCTCCTCATCTACTAC GCTAGGCGGGGCCTTCTCGACTCAGCACTCAAGGTGTTCGACGAAATGCCGCAAAGGAAC CTCGTCTCCTGGACAGCCATGGTCTCTGCCTCAACGGGCAATGGCGCGCCCCACCTGGGC TTTCGTTTCTTCGTTTCCATGATCAGGAGCGGCTTCTGCCCCAACGAGTTCTCGCTCGCA ACCATGCTCACTGCCTGCCACTCCATGGTGGCCCATTCCTCCAATAAGCTCCTCATCGCC CTTTCGCTCCACGGTGTTGCCGTCAGAGCTGGCCTGGATAGCAATCCTTTTGTGGGGAGC TCTCTGCTGCTCATGTACGCAAAGCATGGCCGCATTGCTGCTGCACAGCGTGCATTCGCA CATATCAGGAACAAAGATTTGACGTGCTGGAATGCCATGCTCGAAGGATATGTTTTGAAT GGTTTTGGGCATCATGCCATTCGTACGGTGCTCCTGATGCATCATTCTGGGCTTGCACCT GACCGGTACACCTATATTTCTGCTGTTAAGGCTTGTTCAATCAGTGCGCAGTGGGATCTT GGGCGACAGCTTCACTGTCTTGTCATCCACAGCATGCTCGAGTCCAATACCTCGGTCATG AATTCCCTTGTTGATATGTATTTCAGAGCCAGACAGAAGGAAACTGCTGCTTCTGTCTTT CGCAAGATTAGACAAAAAGACACCGTGTCTTGGAATACCATGATTTCAGGTTTTGCGCAT GATGAAGACGACAAGGCAGTTTTTGGCTGCTTGATTGACATGTCACGAATCGGATGTAAA CCTAATGAGGTTACTTTCTCTGTCTTGTTGAGGCTGAGTGGTGCTAAAGAGAATGAATCA TTGGGCCTTCAGATCGTTGCCCTTGCCTACCGTCATGGCTATACTGACAATGTTCTTGTA GCAAATGCAGTAATCAACATGCTATCCAGATGTGGATTGCTCAACCGTGCATATGGCTTC TTCTGTAGTCTCACATCCACAAACATTGTGACATGGAACGAGATGATTGCAGGTTATGGT CTCTTCAGTCACTCTGAAGAAACAATGAAGCTCTTCCGCAGTTTGGTTTGCTTTGGAGAA AGACCTGATGAGTTCACCTACTCAGCTGTTCTGTCTGCCTTCCAGGAAGCTCAAGGTGCA AGGGATCATGAGCAAATCCACGCAACTATTCTGAAACAAGGTTTTGCCTCCTGTCAGTTC GTGTCCACTTCACTGATCAAGGCAAATGTAGCAGCGTTTGGGTCAGTTCAGATTTCACTA AAAATCATCGAGGACGCTGGCAAGATGGAGCTGGTGTCATGGGGAGTCGTTATCTCAGCA TTCCTGAAGCATGGCCTGAACGATGAGGTCATTTTCCTTTTCAACTTGTTTAGAGGTGAC TCCACCAACAAGCCTGATGAGTTCATCCTGGCAACCGTCCTAAATGCCTGTGCAAATGCT GCATTGATCAGGCACTGCAGATGCATCCATTCGCTTGTTCTCAAGACAGGTCATTCCAAG CACTTCTGCGTAGCTAGCGCTGTTGTTGATGCCTACGCGAAATGTGGTGAGATTACCTCT GCAGAGAGCGCTTTCACCGTTGTTTCATCAGGAACCGACGATGCCATCCTGTACAACACC ATGCTGACAGCTTATGCCAACCATGGTTTGATCCACGAAGCTCTCAACCTCTACGAAGAG ATGACAAAGGCTAAATTGAGTCCAACACCAGCCACATTCGTTGCCATTCTGTCAGCCTGC AGCCATTTGGGGCTAGTCGAGCAGGGGAAGCTTGTGTTCAGCACCATGCTGTCTGCGTAT GGCATGCATCCAGCAAGAGCCAACTACGCCTGCCTGGTTGATCTCCTGGCAAGAAAGGGG CTACTCGACGAGGCGAAGGGTGTGATCGATGCAATGCCGTTCCAACCATGGCCTGCAGTT TGGAGGTCGCTGGTGATCGGTTGCCGGATACATGGGAACAAGCAACTTGGCGTGCTTGCG GCAGAGCAGATCCTGAGAATGGCGCCGAGCAGCGATGGCGCTTATATTTCGCTGTCAAAC GTGTATGCTGACGATGGAGAGTGGCAGTCTGCAGAGGAGACCAGGAGGAGGATGGTTCAG AATCACGTTCAGAAGTTGCAAGGGTACAGCAGGATTGAGATGTAG