Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0105400-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:252427:254863:-1 gene:Os11g0105400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ribosomal protein L10 family protein. (Os11t0105400-01)
Sequence

ATGCCGAAATCCAAGCGCAACCGCCCTGTAACCTTATCCAAGACCAAGAAGAAGCCTGGA
TTAGAGCGCAAGGGCAAAGTGGTTACCGATATCAAAGATGCCGTCGAGCACTACGCTAAT
GCCTATGTCTTCACCTACGATAACATGAGGAATCAGAAGCTCAAGGACCTCAGAGAGCAG
CTCAAGTCCTCCAGCAGGATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGCTGGGG
CGTTCATCTGCTGATGAAGCTAAAACAGGCCTTCATAAACTTTCCAAGTTCCTACAAGGT
GATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGATGTAGAGAGATTATTTCGAGAA
TTCGAAGAGCATGATTTCGCCAGGACAGGAAGTATTGTGACAGAAACGGTGGAGCTTAAG
GAAGGCCCCTTGGAACAGTTTACACATGAAATGGAACCCTTTCTACGCAAGCAAGGACTG
CCAGTTCGTCTGAACAAAGGGGCGGTGGAATTAGTTGCAGATCACATAGTATGTGAAGAA
GGGAAGCCCATTTCACCAGAAGCAGCACAAACTCTGCGGTTGCTTGGGATGCAGATGGCA
ACATTCCGACTGTACCTTGTCTGCCGGTGGTCCTCTGATGACTTTGAAGTTTACAAGGAA
GGCTTGGCGCAACTGCGAGCTGAAGCTGATGATTCTTCTTAA

Peptide Sequence

PEP ID

Os11t0105400-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:252427:254863:-1 gene:Os11g0105400 transcript:Os11t0105400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ribosomal protein L10 family protein. (Os11t0105400-01)
Sequence

MPKSKRNRPVTLSKTKKKPGLERKGKVVTDIKDAVEHYANAYVFTYDNMRNQKLKDLREQ
LKSSSRIFLAGKKVMQIALGRSSADEAKTGLHKLSKFLQGDTGLFFTNLPRDDVERLFRE
FEEHDFARTGSIVTETVELKEGPLEQFTHEMEPFLRKQGLPVRLNKGAVELVADHIVCEE
GKPISPEAAQTLRLLGMQMATFRLYLVCRWSSDDFEVYKEGLAQLRAEADDSS

Transcript Sequence

Transcript ID

Os11t0105400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:252427:254863:-1 gene:Os11g0105400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ribosomal protein L10 family protein. (Os11t0105400-01)
Sequence

ACCCACAGAGCAACATCGCCGCCGCCACCGCCAGCCGCAACAGCACCGACGACGAGGAGG
AGCTGAGAATACGAGGCGATGCCGAAATCCAAGCGCAACCGCCCTGTAACCTTATCCAAG
ACCAAGAAGAAGCCTGGATTAGAGCGCAAGGGCAAAGTGGTTACCGATATCAAAGATGCC
GTCGAGCACTACGCTAATGCCTATGTCTTCACCTACGATAACATGAGGAATCAGAAGCTC
AAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAGGATATTCCTTGCTGGAAAGAAGGTC
ATGCAGATAGCGCTGGGGCGTTCATCTGCTGATGAAGCTAAAACAGGCCTTCATAAACTT
TCCAAGTTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGATGTA
GAGAGATTATTTCGAGAATTCGAAGAGCATGATTTCGCCAGGACAGGAAGTATTGTGACA
GAAACGGTGGAGCTTAAGGAAGGCCCCTTGGAACAGTTTACACATGAAATGGAACCCTTT
CTACGCAAGCAAGGACTGCCAGTTCGTCTGAACAAAGGGGCGGTGGAATTAGTTGCAGAT
CACATAGTATGTGAAGAAGGGAAGCCCATTTCACCAGAAGCAGCACAAACTCTGCGGTTG
CTTGGGATGCAGATGGCAACATTCCGACTGTACCTTGTCTGCCGGTGGTCCTCTGATGAC
TTTGAAGTTTACAAGGAAGGCTTGGCGCAACTGCGAGCTGAAGCTGATGATTCTTCTTAA
GCTTGTTTGGCTTGCACACCCAGTTTGCAGTGACGCACTTGCTGTCTTGTTGTGCTGAGG
CAGTTTTTGGTATTGTGCGTGCGCATGGCGTTTGTGCTCTTGGTACGTTGGAAATCTGAA
AAATGTAATATGTTAACAGGGTGTTCGTTGTCCTAGTATTTTCTATAAAGCTATTCGTGT
CTTATTAACAGGGTGGCACATCTACGCAGCTAACATGCTTCATTTGTTGGTATTTAAACT
CTTCTGAACAATTGTTACTCCCTGAATGAATTCGTTGGTAGCTATAATTTGATTTCTCGC
C