Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os11t0104800-01
CDS Infomation

cds chromosome:IRGSP-1.0:11:227327:231807:1 gene:Os11g0104800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:trichome birefringence-like 10 description:Hypothetical conserved gene. (Os11t0104800-01)
Sequence

ATGACCAAGCCACAGCAGCAATCGCCCCCTTCCACCACAGCCACCACCACCACCTCACCT
CCTCCACCACCGCCCTCCACTCCGCCCCCCGCCTCCTCCTCCTCCTCCTCTTTAGCTAAG
CTCCCTCTCCGCCTCCACTCTCTCGCCTCCTCCTCCCGCTCCCTCCTCTCCGCGCTGCGC
CGCTCCCCGGTCACCACCCTCGTCGCCGCCTTCTTCCTCCTCGCCCTCTTCATGTACGGC
GAGGACGTCCGCACCCTCGCCGAGCTCTCCATCGACGACTACCTCTATCCCGACGCCGAT
TTCTACAACGTCTCCGCCCTTCCCCCTCTCCTCCTCCCCCCGCCCACCTGCGACCTCTCC
CGCGGCCGATGGGTATTCGACAACACCTCCCTCCCGGCCTACAGGGAGAAGGAATGCACC
TTCCTCACCAAGCAGGTCTCCTGCCTCGCCAATGGCCGCCCCGACGACCTATGGCAGTAC
TGGCGCTGGCAACCCAACAACTGCTCGCTCCCCACGTTCGACGCGCGGCGGTTCATGGAG
AAGATGCGGGGGAAGAGGATGATGTTCGTGGGGGACTCGCTGAATCGGAACCAGTGGGAG
TCGCTGGTGTGCCTGGTGCAGCCCATCCTATCCAAGGGCAGGAAGAAGATCGTCAAGCGC
GGTTCCTTCAACATCTTCTACGCCAAGGAGTATCGCGCCACCCTCGAGTTCTACTGGGCT
CCATTCCTCGTCGAGTCCAACTCCGACAACCCCAATTTCCACCACATCGACCAGCGCATC
ATCAGCCCTGAGCGGATCGAGAGCCATGCCAACAACTGGAAGGACGTTGATTACCTCATC
TTCAACACCTACATCTGGTGGATGAACAACGAAGACATCAAAGTCAGGAGGCCAAATTCA
ACTTCTTGGTCAGATCACGACGAGGTGCCAAGGATCGAGACCTATGGCCGTGTGTTCAAG
ACTTGGTCGACCTGGCTGGAACAGAATGTTGATCCTGCCAGGACTTCGGTGTTCTTCATG
ACAATTTCTCCTCTTCACAACAGCCCAGCACAATGGGGGAACCCGAACGGGATCAAATGT
GTAAAGGAGACACTTCCAGTCCTCAACTACACCAAGCCACTGGATCTCAACCACGACATG
CGTATGTACGACCTGGTAGCAAAAGTTGCTAAAAACATGAAGAATGTTCCAGTGTCGTTG
ATCGACATCACAAGGATGTCAGATTACAGGAAGGATGCCCACACATCATTGTATTCCATC
CGTCAAGGTAAACTGTTGACACCGGAGCAGAAGGCTGACCCACAGAAGTACGCTGACTGC
ATCCATTGGTGCCTTCCTGGGGTACCAGACGTCTGGAACCAGATACTTTACACCAGGATC
CTCTCCAAATCCTCCCCTCCATCCCCACATCCCCCTCTCCCTCCACAATGA

Peptide Sequence

PEP ID

Os11t0104800-01
PEP Infomation

pep chromosome:IRGSP-1.0:11:227327:231807:1 gene:Os11g0104800 transcript:Os11t0104800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:trichome birefringence-like 10 description:Hypothetical conserved gene. (Os11t0104800-01)
Sequence

MTKPQQQSPPSTTATTTTSPPPPPPSTPPPASSSSSSLAKLPLRLHSLASSSRSLLSALR
RSPVTTLVAAFFLLALFMYGEDVRTLAELSIDDYLYPDADFYNVSALPPLLLPPPTCDLS
RGRWVFDNTSLPAYREKECTFLTKQVSCLANGRPDDLWQYWRWQPNNCSLPTFDARRFME
KMRGKRMMFVGDSLNRNQWESLVCLVQPILSKGRKKIVKRGSFNIFYAKEYRATLEFYWA
PFLVESNSDNPNFHHIDQRIISPERIESHANNWKDVDYLIFNTYIWWMNNEDIKVRRPNS
TSWSDHDEVPRIETYGRVFKTWSTWLEQNVDPARTSVFFMTISPLHNSPAQWGNPNGIKC
VKETLPVLNYTKPLDLNHDMRMYDLVAKVAKNMKNVPVSLIDITRMSDYRKDAHTSLYSI
RQGKLLTPEQKADPQKYADCIHWCLPGVPDVWNQILYTRILSKSSPPSPHPPLPPQ

Transcript Sequence

Transcript ID

Os11t0104800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:11:227327:231807:1 gene:Os11g0104800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:trichome birefringence-like 10 description:Hypothetical conserved gene. (Os11t0104800-01)
Sequence

GAGCCGAAGAACACCAAACTTCCCCTCCGATCCCCTTCAAATACTCCGGCCGGACTCGTC
GGAGAGCCGCCGCGCGCAATTGAGTGAGCCTTCTCGAGGAAGGAAGGGGGCGAGTCTGGC
CGCCGTCGCCATGACCAAGCCACAGCAGCAATCGCCCCCTTCCACCACAGCCACCACCAC
CACCTCACCTCCTCCACCACCGCCCTCCACTCCGCCCCCCGCCTCCTCCTCCTCCTCCTC
TTTAGCTAAGCTCCCTCTCCGCCTCCACTCTCTCGCCTCCTCCTCCCGCTCCCTCCTCTC
CGCGCTGCGCCGCTCCCCGGTCACCACCCTCGTCGCCGCCTTCTTCCTCCTCGCCCTCTT
CATGTACGGCGAGGACGTCCGCACCCTCGCCGAGCTCTCCATCGACGACTACCTCTATCC
CGACGCCGATTTCTACAACGTCTCCGCCCTTCCCCCTCTCCTCCTCCCCCCGCCCACCTG
CGACCTCTCCCGCGGCCGATGGGTATTCGACAACACCTCCCTCCCGGCCTACAGGGAGAA
GGAATGCACCTTCCTCACCAAGCAGGTCTCCTGCCTCGCCAATGGCCGCCCCGACGACCT
ATGGCAGTACTGGCGCTGGCAACCCAACAACTGCTCGCTCCCCACGTTCGACGCGCGGCG
GTTCATGGAGAAGATGCGGGGGAAGAGGATGATGTTCGTGGGGGACTCGCTGAATCGGAA
CCAGTGGGAGTCGCTGGTGTGCCTGGTGCAGCCCATCCTATCCAAGGGCAGGAAGAAGAT
CGTCAAGCGCGGTTCCTTCAACATCTTCTACGCCAAGGAGTATCGCGCCACCCTCGAGTT
CTACTGGGCTCCATTCCTCGTCGAGTCCAACTCCGACAACCCCAATTTCCACCACATCGA
CCAGCGCATCATCAGCCCTGAGCGGATCGAGAGCCATGCCAACAACTGGAAGGACGTTGA
TTACCTCATCTTCAACACCTACATCTGGTGGATGAACAACGAAGACATCAAAGTCAGGAG
GCCAAATTCAACTTCTTGGTCAGATCACGACGAGGTGCCAAGGATCGAGACCTATGGCCG
TGTGTTCAAGACTTGGTCGACCTGGCTGGAACAGAATGTTGATCCTGCCAGGACTTCGGT
GTTCTTCATGACAATTTCTCCTCTTCACAACAGCCCAGCACAATGGGGGAACCCGAACGG
GATCAAATGTGTAAAGGAGACACTTCCAGTCCTCAACTACACCAAGCCACTGGATCTCAA
CCACGACATGCGTATGTACGACCTGGTAGCAAAAGTTGCTAAAAACATGAAGAATGTTCC
AGTGTCGTTGATCGACATCACAAGGATGTCAGATTACAGGAAGGATGCCCACACATCATT
GTATTCCATCCGTCAAGGTAAACTGTTGACACCGGAGCAGAAGGCTGACCCACAGAAGTA
CGCTGACTGCATCCATTGGTGCCTTCCTGGGGTACCAGACGTCTGGAACCAGATACTTTA
CACCAGGATCCTCTCCAAATCCTCCCCTCCATCCCCACATCCCCCTCTCCCTCCACAATG
AGAAGCAGGGAGCATGATTTTTTTTTGCCCCATCGTATACTATATAGGAAATGTACCATT
ACTATTCAATTTTTTTGGTAGTTTGGTGAAGAAAATCAAGCTATAGAGAGAAAAAGGATG
GAGTGGGCTGTTTACTGATGGCATGTAAAATCGTTCAATTGAATTGTAAATTAGTTTTGA
GCTAACCAATTGAGCAAACAGCACTGTTGTAGAC