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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0580900-02
CDS Infomation

cds chromosome:IRGSP-1.0:10:23192525:23194969:-1 gene:Os10g0580900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os10t0580900-01);Conserved hypothetical protein. (Os10t0580900-02);Non-protein coding transcript. (Os10t0580900-03)
Sequence

ATGGATCCCTTTTTCCGCAGAGCTTCCAGTGACCCCTTGTGCTTGGAAGACAACTCCGTC
CAACATGGAATTGAAAGATGCCCATTCCTAAGGAACATCAATGAGCCTACAAGTTTTTCA
TTCTCGTCCGTTAATTTTCCTGTTCCTGCAAGAGGAGACAAGGGTCCAATTTTTGAAGAT
GGACCCAATTTTGACATGGCATTTCGAGTTTTCCATGGCCAAGATGGGGTTGTTCCACTT
TCACATGGATCATTTGAGCGATTTGAGAAGCCAATGCCAAAGCCCAATCCTGAATTTAAC
CCCTTGGCTGCTAAAGCAGCTACCATCAGTCTCTCTGCATTTGGAGGTTTTTTCAGCTTT
GGTGATTTCTCAAATAAGCGCAATAAGAAGAATAGTAACCAAAAGAAGCCCAACAACCTT
CCCCAGAACGGAGGTCAGCCTAATAACCATGAAGCACTGAGCAATGAGTGGCTGGAAATG
GGTCAATGCCCCCTGGCAAAGTCGTACAGGGCATTAAGTGGTGTCGTGCCCCTCGTCGCA
AAGATGATGACACCCCCGGCTGGTATGAAACTGAGATGCCCACCTGCAGTAGTTGCCGCC
CGTGCAGCACTATCACGCACAGCCTTTGCCAAGGGGCTTCGTCCTCAGCCCCTACCGACG
AAAATACTGGTGATGGCGTTGCTTGGTATGGCAGCAAACGTTCCCCTTGGCATCTGGAGG
GAGCACACGGAGAAATTCTCAGTGCAGTGGTTTGCCGCAGTCCATGCGGCGGTACCTTTC
ATAGGCATGCTCAGGAAGTCTGTGCTGATGCCAAAGACAGCCATGGCGCTTACCATAGCT
GCCTCAATATTGGGTCAGACAATTGGTTCGAGAGCTGAGCGTATCAGATTGAAGAGGGCA
GCAAAGGTTGCTGCTGGTAGCCAGGGTGATGCTAGCACCAGAATGAGCCTGAAAACCGGG
AGATACACTGATGATGTCCAGTTCTGGGATCCGCTTGCCCTCAGAGTTGAGAGTACCATA
GGAACAGGAACTCCGGTTCTTGTTCCAACTTTCCATTGA

Peptide Sequence

PEP ID

Os10t0580900-02
PEP Infomation

pep chromosome:IRGSP-1.0:10:23192525:23194969:-1 gene:Os10g0580900 transcript:Os10t0580900-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os10t0580900-01);Conserved hypothetical protein. (Os10t0580900-02);Non-protein coding transcript. (Os10t0580900-03)
Sequence

MDPFFRRASSDPLCLEDNSVQHGIERCPFLRNINEPTSFSFSSVNFPVPARGDKGPIFED
GPNFDMAFRVFHGQDGVVPLSHGSFERFEKPMPKPNPEFNPLAAKAATISLSAFGGFFSF
GDFSNKRNKKNSNQKKPNNLPQNGGQPNNHEALSNEWLEMGQCPLAKSYRALSGVVPLVA
KMMTPPAGMKLRCPPAVVAARAALSRTAFAKGLRPQPLPTKILVMALLGMAANVPLGIWR
EHTEKFSVQWFAAVHAAVPFIGMLRKSVLMPKTAMALTIAASILGQTIGSRAERIRLKRA
AKVAAGSQGDASTRMSLKTGRYTDDVQFWDPLALRVESTIGTGTPVLVPTFH

Transcript Sequence

Transcript ID

Os10t0580900-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:23192525:23194969:-1 gene:Os10g0580900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os10t0580900-01);Conserved hypothetical protein. (Os10t0580900-02);Non-protein coding transcript. (Os10t0580900-03)
Sequence

CCATCCTCTTCTCCTCCGCATTTTGCTCTTCATTCATTTGTGCTGTGCTCTCCACGCGCC
CTCGCCTCTCTTTCCTCCGATCCTCCGCTTCGTTCGAATCCCACAGGTCAGTTTGTGGTG
TTCATATGGATCCCTTTTTCCGCAGAGCTTCCAGTGACCCCTTGTGCTTGGAAGACAACT
CCGTCCAACATGGAATTGAAAGATGCCCATTCCTAAGGAACATCAATGAGCCTACAAGTT
TTTCATTCTCGTCCGTTAATTTTCCTGTTCCTGCAAGAGGAGACAAGGGTCCAATTTTTG
AAGATGGACCCAATTTTGACATGGCATTTCGAGTTTTCCATGGCCAAGATGGGGTTGTTC
CACTTTCACATGGATCATTTGAGCGATTTGAGAAGCCAATGCCAAAGCCCAATCCTGAAT
TTAACCCCTTGGCTGCTAAAGCAGCTACCATCAGTCTCTCTGCATTTGGAGGTTTTTTCA
GCTTTGGTGATTTCTCAAATAAGCGCAATAAGAAGAATAGTAACCAAAAGAAGCCCAACA
ACCTTCCCCAGAACGGAGGTCAGCCTAATAACCATGAAGCACTGAGCAATGAGTGGCTGG
AAATGGGTCAATGCCCCCTGGCAAAGTCGTACAGGGCATTAAGTGGTGTCGTGCCCCTCG
TCGCAAAGATGATGACACCCCCGGCTGGTATGAAACTGAGATGCCCACCTGCAGTAGTTG
CCGCCCGTGCAGCACTATCACGCACAGCCTTTGCCAAGGGGCTTCGTCCTCAGCCCCTAC
CGACGAAAATACTGGTGATGGCGTTGCTTGGTATGGCAGCAAACGTTCCCCTTGGCATCT
GGAGGGAGCACACGGAGAAATTCTCAGTGCAGTGGTTTGCCGCAGTCCATGCGGCGGTAC
CTTTCATAGGCATGCTCAGGAAGTCTGTGCTGATGCCAAAGACAGCCATGGCGCTTACCA
TAGCTGCCTCAATATTGGGTCAGACAATTGGTTCGAGAGCTGAGCGTATCAGATTGAAGA
GGGCAGCAAAGGTTGCTGCTGGTAGCCAGGGTGATGCTAGCACCAGAATGAGCCTGAAAA
CCGGGAGATACACTGATGATGTCCAGTTCTGGGATCCGCTTGCCCTCAGAGTTGAGAGTA
CCATAGGAACAGGAACTCCGGTTCTTGTTCCAACTTTCCATTGATGATGTGCCTTGGGTT
TGTTTCTTCGGTCGATTATTGTTGTATTCATTGTGTTGTGCCTTAGTCTTTATACTAAAT
ATTACGTTGGATGCTTCTCCC