Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os10t0580300-01
CDS Infomation	cds chromosome:IRGSP-1.0:10:23148893:23153234:-1 gene:Os10g0580300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYCLIN-DEPENDENT KINASE E;1 description:Serine/threonine protein kinase domain containing protein. (Os10t0580300-01)
Sequence	ATGGGGGACGGCCGCGTCGGAGGTGGAACGAATCGGCCGGCATGGCTGCAGCAATACGAA CTAGTGGGCAAGATTGGCGAGGGGACCTACGGCCTCGTCTTCCTCGCTCGCCTCAAACAA TCGCATCCCCACGCTGCCGCTGGCGTTGGCCGCCGTGGCTCTCCCATCGCCATCAAGAAG TTCAAGCAGTCCAAGGAGGGCGACGGTGTCTCGCCCACCGCCATCAGAGAGATCATGCTT CTGCGTGAGATCAACCACGAGAATGTTGTCAAGCTCGTCAATGTTCACATCAACCACGCC GACATGTCCCTCTACCTCGCCTTCGATTACGCCGAGCACGATCTCTATGAGATTATCAGG CATCACAGAGAGAAGCTTAACCTCCCCATAAATCCCTACACAGTCAAATCTTTGCTCTGG CAACTGCTCAATGGTCTCAACTATCTCCATAGTAACTGGATTATCCATCGAGATCTCAAG CCTTCTAATATACTGGTCATGGGAGAAGGAGAAGAACATGGAATTATAAAGATTGCTGAT TTTGGACTCGCTAGGATATATCAAGCTCCATTAAAGCCATTAAGTGATAACGGGGTTGTT GTTACCATCTGGTATCGGGCTCCAGAGTTGTTACTTGGGGCAAAGCACTACACAAGTGCT GTTGATATGTGGGCAGTTGGTTGCATTTTTGCTGAATTGCTTACACTCAAACCACTGTTC CAAGGTGTTGAAGCCAAAGCTACTCCAAACCCGTTTCAACTTGATCAACTAGACAAGATT TTTAAGGTCTTAGGTCATCCTACCGTTGAGAAATGGCCTACCCTCGCTAATCTTCCATGC TGGCAAAACGATCAACAACACATTCAAGGGCATAAGTATGAGAACACAGGACTTCATAAT ATTGTTCACTTGCCTCAGAAGAGTCCTGCGTTTGATCTTCTCTCAAAAATGCTCGAGTAT GATCCTCGAAAGCGTATAACAGCTGCGCAAGCTTTGGAACATGAGTACTTTCGAATGGAT CCTCTGCCTGGACGGAATGCACTTTTACCATCGCAGGCTGGAGAGAAAATTGTGCAATAT CCTGTGCGTCCAGTTGATACCACAACTGATTTTGAAGGAACAACAAGCCTTCAACCAACT CAAGCGCCATCAGGGAACGCAGCTCCTGGCAACCAGTCTGTGGTACCGAGACCCATTCCG AGGCAAATGCAACAACCCATGGTCGGTATGTCGAGAATGGGTGGTACAAACATGGCGGCC TTTGGTGCAGCTCCGCAAGGAGGCATAGCTGGGATGAATCCTGGTAATATTCCAATGCAG AGGGGCGCTGGAGCCCAATCTCATCCGCATCAGTTGAGAAGGAAAGCTGATCAAGGGATG GGGATGCAGAACCCCGGTTATCCTACTCAACAGAAGAGGCGGTTCTGA

Peptide Sequence

PEP ID	Os10t0580300-01
PEP Infomation	pep chromosome:IRGSP-1.0:10:23148893:23153234:-1 gene:Os10g0580300 transcript:Os10t0580300-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYCLIN-DEPENDENT KINASE E;1 description:Serine/threonine protein kinase domain containing protein. (Os10t0580300-01)
Sequence	MGDGRVGGGTNRPAWLQQYELVGKIGEGTYGLVFLARLKQSHPHAAAGVGRRGSPIAIKK FKQSKEGDGVSPTAIREIMLLREINHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIR HHREKLNLPINPYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEHGIIKIAD FGLARIYQAPLKPLSDNGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLF QGVEAKATPNPFQLDQLDKIFKVLGHPTVEKWPTLANLPCWQNDQQHIQGHKYENTGLHN IVHLPQKSPAFDLLSKMLEYDPRKRITAAQALEHEYFRMDPLPGRNALLPSQAGEKIVQY PVRPVDTTTDFEGTTSLQPTQAPSGNAAPGNQSVVPRPIPRQMQQPMVGMSRMGGTNMAA FGAAPQGGIAGMNPGNIPMQRGAGAQSHPHQLRRKADQGMGMQNPGYPTQQKRRF

Transcript Sequence

Transcript ID	Os10t0580300-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:10:23148893:23153234:-1 gene:Os10g0580300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYCLIN-DEPENDENT KINASE E;1 description:Serine/threonine protein kinase domain containing protein. (Os10t0580300-01)
Sequence	GGCGGGTTCGGCTGGATCTTTTGTTCCCCCTTTTCCTTTCTTCTCCGGCAGCGGCGGCGG CGATGGGGGACGGCCGCGTCGGAGGTGGAACGAATCGGCCGGCATGGCTGCAGCAATACG AACTAGTGGGCAAGATTGGCGAGGGGACCTACGGCCTCGTCTTCCTCGCTCGCCTCAAAC AATCGCATCCCCACGCTGCCGCTGGCGTTGGCCGCCGTGGCTCTCCCATCGCCATCAAGA AGTTCAAGCAGTCCAAGGAGGGCGACGGTGTCTCGCCCACCGCCATCAGAGAGATCATGC TTCTGCGTGAGATCAACCACGAGAATGTTGTCAAGCTCGTCAATGTTCACATCAACCACG CCGACATGTCCCTCTACCTCGCCTTCGATTACGCCGAGCACGATCTCTATGAGATTATCA GGCATCACAGAGAGAAGCTTAACCTCCCCATAAATCCCTACACAGTCAAATCTTTGCTCT GGCAACTGCTCAATGGTCTCAACTATCTCCATAGTAACTGGATTATCCATCGAGATCTCA AGCCTTCTAATATACTGGTCATGGGAGAAGGAGAAGAACATGGAATTATAAAGATTGCTG ATTTTGGACTCGCTAGGATATATCAAGCTCCATTAAAGCCATTAAGTGATAACGGGGTTG TTGTTACCATCTGGTATCGGGCTCCAGAGTTGTTACTTGGGGCAAAGCACTACACAAGTG CTGTTGATATGTGGGCAGTTGGTTGCATTTTTGCTGAATTGCTTACACTCAAACCACTGT TCCAAGGTGTTGAAGCCAAAGCTACTCCAAACCCGTTTCAACTTGATCAACTAGACAAGA TTTTTAAGGTCTTAGGTCATCCTACCGTTGAGAAATGGCCTACCCTCGCTAATCTTCCAT GCTGGCAAAACGATCAACAACACATTCAAGGGCATAAGTATGAGAACACAGGACTTCATA ATATTGTTCACTTGCCTCAGAAGAGTCCTGCGTTTGATCTTCTCTCAAAAATGCTCGAGT ATGATCCTCGAAAGCGTATAACAGCTGCGCAAGCTTTGGAACATGAGTACTTTCGAATGG ATCCTCTGCCTGGACGGAATGCACTTTTACCATCGCAGGCTGGAGAGAAAATTGTGCAAT ATCCTGTGCGTCCAGTTGATACCACAACTGATTTTGAAGGAACAACAAGCCTTCAACCAA CTCAAGCGCCATCAGGGAACGCAGCTCCTGGCAACCAGTCTGTGGTACCGAGACCCATTC CGAGGCAAATGCAACAACCCATGGTCGGTATGTCGAGAATGGGTGGTACAAACATGGCGG CCTTTGGTGCAGCTCCGCAAGGAGGCATAGCTGGGATGAATCCTGGTAATATTCCAATGC AGAGGGGCGCTGGAGCCCAATCTCATCCGCATCAGTTGAGAAGGAAAGCTGATCAAGGGA TGGGGATGCAGAACCCCGGTTATCCTACTCAACAGAAGAGGCGGTTCTGACCGACTGAAT TTGTAATTGTATATCTATTTGGTGTGTTACTTGTGAGCACGCTTAGCTTTTGCGGTGGTT GCTCCTAGTCGTACAGTGAGAATTGTATCTGTTCTGTTGTAATTGAACGCCATCACAACC