Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0579600-01
CDS Infomation

cds chromosome:IRGSP-1.0:10:23114698:23117665:1 gene:Os10g0579600 gene_biotype:protein_coding transcript_biotype:protein_coding description:TGF-beta receptor, type I/II extracellular region family protein. (Os10t0579600-01)
Sequence

ATGGGCATGGAGAGCGGAGATGCCCAACTGCCGCTGCTCCACCACCAGGCTTCCGCATCC
AATCAGCACTATACCAAGCCCCCCTTCAACTGGAAGGCTCCTGCTCTTATCTTGGCCTTT
GAATTCTTGGAGAGCATTGCCTATGCTGGCATCTCCCTCAACTTGGTCGTTTATCTTGGA
ACCGTCCTCCATGGAACTACCGCCTCTAACGCAGCCAATGTTGATACATGGAACGGAACC
ACTTTTCTTACACCGGTGCTTGGAGCCTTCTTGGCTGATACATACTGGGGAAAGTACAAG
ACCATTGCCATCTCTACAGTTTTCTATCTTATTGGGTTGCTTGTAATTACCGCCTCTGCT
GTCATCCCATCACTACAACCTGCTCCATGCAATGGGAGCTCATGTCCTCCTGCAACAGGG
TTTCAGTATTTTGTCTTCTTCACCGCGCTCTACCTTATTTCGGTTGGCACCGGGGGTGTC
AAATCAGCATTACTCCCCTTTGGAGCTGACCAGTACAACGATTCAAACCTCGAAGAGAGT
AAAAAGAAGCAATCTTTCTTTAGCTTGTTCTTCATTGCTATCAACCTTGGAGTGTTCATT
TCGGGCACTGTCGTCGTTTGGATACAGCAAAATGTTGCTTGGTCTCTCGGATTCGGCATC
TCCTCAATATGCCTTGTTGTTGCCACAGTTGCCTTTTTGGCAGGAACACCAGTGTACAAG
GTCCAGCTTCCCAGTGGAAGCCCACTCAAGAGTGTTGTAATGGTTTTTGTTGCCTCTTTT
AAGAAGAGAAAACTGGAGGTTCCTGCCGATAACGCACTCCTGTATGAAGGGGATGATGCT
GATTTAAGCAATGGACAATCAGTCAAACTAGCACATACTGATGGTTTCAGGTGGTTAGAT
AAGGCGGCAGTGGTTTTTGAGGAGGTGGAAGAGATAAATAAGGATGAGGGTGGGGGTGGA
GGGTGGCTGCAGTGTTCGGTAACGCAGGTGGAGGAAGTGAAGATTCTGCTGCGGATGCTG
CCGATATGGGTGACCAGCGTGCTGTACGCGGCTTCCTTGGGTCAGACGGCCACCACCTTC
GTGCAGCAGGGGAATGCCATGAACACCAAGATCGGATCCTTCTCTGTCCCGGCGGCATCC
CTCAACTCCGCCGAGGTCATCTTCATGATGATCTGGGTGGTGTTCCAGGACACGGTGGTC
GTCCCGATCGCCAGGCGCTACACCGGGAACCCCGCGGGGCTGACGCAGCTGCAGCGGATG
GGCGTGGGGCGGTTGCTGGCGGTGCCGGCGCTGGCGGTGGCGGCCGTGCTGGAGACGTGG
CGGCTGCGCAGCGTCAGGGACGGCGGCAACCTGAGCATCGCGTGGCAGCTGCCGCAGTTC
GTCATCCTGGCCTGCTCCGACGTCTTCTGCGGCATCGCTCAGCTGGAATTCTTCTACTCG
GAGGCCCCCGTGTCGATGCGGAGCCTCTGCTCGGCCTTCTCCTTCCTGGCGCTCTCGCTG
GGCTACTACGTCAACTCCCTCGTCGTCTCCATCGTCGCCGTCGTCACCACCACCTCGAAC
AAGGGCTGGCTCCCCGCCGACCTCAACGACGGCCATCTGGACTACTATTTCTGGCTCTGG
ACGGGGATCAGCGCCATCAACTTTGTGGTGTACGCCGCCTTTGCCAAGAATTATACCGTC
AAGAGACTCGCCGTCCCGCACTCGCACTGA

Peptide Sequence

PEP ID

Os10t0579600-01
PEP Infomation

pep chromosome:IRGSP-1.0:10:23114698:23117665:1 gene:Os10g0579600 transcript:Os10t0579600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:TGF-beta receptor, type I/II extracellular region family protein. (Os10t0579600-01)
Sequence

MGMESGDAQLPLLHHQASASNQHYTKPPFNWKAPALILAFEFLESIAYAGISLNLVVYLG
TVLHGTTASNAANVDTWNGTTFLTPVLGAFLADTYWGKYKTIAISTVFYLIGLLVITASA
VIPSLQPAPCNGSSCPPATGFQYFVFFTALYLISVGTGGVKSALLPFGADQYNDSNLEES
KKKQSFFSLFFIAINLGVFISGTVVVWIQQNVAWSLGFGISSICLVVATVAFLAGTPVYK
VQLPSGSPLKSVVMVFVASFKKRKLEVPADNALLYEGDDADLSNGQSVKLAHTDGFRWLD
KAAVVFEEVEEINKDEGGGGGWLQCSVTQVEEVKILLRMLPIWVTSVLYAASLGQTATTF
VQQGNAMNTKIGSFSVPAASLNSAEVIFMMIWVVFQDTVVVPIARRYTGNPAGLTQLQRM
GVGRLLAVPALAVAAVLETWRLRSVRDGGNLSIAWQLPQFVILACSDVFCGIAQLEFFYS
EAPVSMRSLCSAFSFLALSLGYYVNSLVVSIVAVVTTTSNKGWLPADLNDGHLDYYFWLW
TGISAINFVVYAAFAKNYTVKRLAVPHSH

Transcript Sequence

Transcript ID

Os10t0579600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:23114698:23117665:1 gene:Os10g0579600 gene_biotype:protein_coding transcript_biotype:protein_coding description:TGF-beta receptor, type I/II extracellular region family protein. (Os10t0579600-01)
Sequence

GTTCGCCACCATTACACCATTCCATTCCAGTGGTAGAAGATCCGAGATCGAGGAGGAGGT
GAGGAGAGGAGCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGGGCATGGAGAGCGGA
GATGCCCAACTGCCGCTGCTCCACCACCAGGCTTCCGCATCCAATCAGCACTATACCAAG
CCCCCCTTCAACTGGAAGGCTCCTGCTCTTATCTTGGCCTTTGAATTCTTGGAGAGCATT
GCCTATGCTGGCATCTCCCTCAACTTGGTCGTTTATCTTGGAACCGTCCTCCATGGAACT
ACCGCCTCTAACGCAGCCAATGTTGATACATGGAACGGAACCACTTTTCTTACACCGGTG
CTTGGAGCCTTCTTGGCTGATACATACTGGGGAAAGTACAAGACCATTGCCATCTCTACA
GTTTTCTATCTTATTGGGTTGCTTGTAATTACCGCCTCTGCTGTCATCCCATCACTACAA
CCTGCTCCATGCAATGGGAGCTCATGTCCTCCTGCAACAGGGTTTCAGTATTTTGTCTTC
TTCACCGCGCTCTACCTTATTTCGGTTGGCACCGGGGGTGTCAAATCAGCATTACTCCCC
TTTGGAGCTGACCAGTACAACGATTCAAACCTCGAAGAGAGTAAAAAGAAGCAATCTTTC
TTTAGCTTGTTCTTCATTGCTATCAACCTTGGAGTGTTCATTTCGGGCACTGTCGTCGTT
TGGATACAGCAAAATGTTGCTTGGTCTCTCGGATTCGGCATCTCCTCAATATGCCTTGTT
GTTGCCACAGTTGCCTTTTTGGCAGGAACACCAGTGTACAAGGTCCAGCTTCCCAGTGGA
AGCCCACTCAAGAGTGTTGTAATGGTTTTTGTTGCCTCTTTTAAGAAGAGAAAACTGGAG
GTTCCTGCCGATAACGCACTCCTGTATGAAGGGGATGATGCTGATTTAAGCAATGGACAA
TCAGTCAAACTAGCACATACTGATGGTTTCAGGTGGTTAGATAAGGCGGCAGTGGTTTTT
GAGGAGGTGGAAGAGATAAATAAGGATGAGGGTGGGGGTGGAGGGTGGCTGCAGTGTTCG
GTAACGCAGGTGGAGGAAGTGAAGATTCTGCTGCGGATGCTGCCGATATGGGTGACCAGC
GTGCTGTACGCGGCTTCCTTGGGTCAGACGGCCACCACCTTCGTGCAGCAGGGGAATGCC
ATGAACACCAAGATCGGATCCTTCTCTGTCCCGGCGGCATCCCTCAACTCCGCCGAGGTC
ATCTTCATGATGATCTGGGTGGTGTTCCAGGACACGGTGGTCGTCCCGATCGCCAGGCGC
TACACCGGGAACCCCGCGGGGCTGACGCAGCTGCAGCGGATGGGCGTGGGGCGGTTGCTG
GCGGTGCCGGCGCTGGCGGTGGCGGCCGTGCTGGAGACGTGGCGGCTGCGCAGCGTCAGG
GACGGCGGCAACCTGAGCATCGCGTGGCAGCTGCCGCAGTTCGTCATCCTGGCCTGCTCC
GACGTCTTCTGCGGCATCGCTCAGCTGGAATTCTTCTACTCGGAGGCCCCCGTGTCGATG
CGGAGCCTCTGCTCGGCCTTCTCCTTCCTGGCGCTCTCGCTGGGCTACTACGTCAACTCC
CTCGTCGTCTCCATCGTCGCCGTCGTCACCACCACCTCGAACAAGGGCTGGCTCCCCGCC
GACCTCAACGACGGCCATCTGGACTACTATTTCTGGCTCTGGACGGGGATCAGCGCCATC
AACTTTGTGGTGTACGCCGCCTTTGCCAAGAATTATACCGTCAAGAGACTCGCCGTCCCG
CACTCGCACTGATCGTCTCCCTCATCCACCCAACACTGCCTTGTATTATTCCAATCAACC
ATTCTTGTATTATTATTCC