Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0578950-00
CDS Infomation

cds chromosome:IRGSP-1.0:10:23083220:23086588:-1 gene:Os10g0578950 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:acyl-CoA synthetase 2, type 2 ACS description:Similar to 4-coumarate--CoA ligase-like 2. (Os10t0578950-00)
Sequence

ATGCAGCCCGACGCCGCCGCCACCGCCCACCCCAGCTTGAGCTTCTACTCCGCCGCCACG
GGCCTCTACAGCAGCCTCCACCCTCCCCTACCCCTCCCCTCCGACCCCTCTCTCTCCCTC
GTCCCCCACCTCTTCTCCCATCTCCCCCTCCACCACCATTCCCTCCTCGTCGATGCCCCC
ACCGCCGCCACCCTCTCCTGCGCCGACTTCCGCCGCCTCGTCTCCTCCCTCGCCGCCGGC
CTCCGCCGCCGCCTCCACATCGCCAGGGGATCCCTCGTCCTGCTCCTCCTCCCCAACTCT
CTCACCTTCCCCGTTGCCTTCCTCGCCGTCCTCGCCACCGGCGCCGTCGCCACCACCATG
AACCCCTCCAGCGCCCCCGCCGAGATCGCCGCGCGCCTGCGGGACACCGCCCCCTCCCTC
GTGCTCGCCTCCACCCACAACGCCGCTAAGCTTCCGCCTCTCGCCGCCCCGCTCGTCCTC
GTGCCCGACACCTTCCAGCAGCAACATGATGATGATCAGTTCGACTTCTTCTTCCACGCG
CTGCTCGAGACCGACCCCGAAACGCCGGTGGAGATGGGGGTGGGGGTGGGGCAGGACGAC
GCCGCCGCCGTCCTCTACTCGTCGGGGACGAGCGGGCGGAGCAAGGGCGTGGTGGTGACG
CACCGCAACCTGATCGCAATGGTGGAGCTGTTCGTGCGGTTCGAGGCGTCGCAGTACACG
CGGCCTGCTCGTGACAATGTCTACCTGGCGGCATTGCCCATGTTCCACGTCTACGGCCTC
TCCCTCTTCGCCGTGGGCCTCCTCTCGCTCGGCTGCACGGTTGTCGTGATGAGGAGGTTC
AACGTCGACGACGCCGTCAAGGCCATCCGCAAGTACAAGGTGACGCACCTGCCGCTCGTG
CCGCCCATCATGTCGGCACTGCTCAGGGCCAACCCGCCCTTGGAATTGGATTCCTTGCTG
CAGGTCTCCAGCGGCGCTGCTCCCCTCAACCACACCCTCATTCACCACTTCCTTCACGCC
TTCCCCCACGTTGATTTCATTCAGGGGTATGGCATGACTGAATCTACTGCCGTAGGAACT
CGCGGCTTCAATACATGCAAGCACAAGAAGTATGCCTCAGTAGGTCTTTTAGCCCCCAAC
ATGCATGCTAAAATTGTTCATCTGGAAAGTGGTTCTTGTCTGCCTCCAGGCTCTTATGGG
GAGTTATGGCTCCATGGCCCGGCTATAATGAAAGGTTACTTGAATGATGATGATGATGCT
TTCACTAGAAAGGATGGCTGGTTGAGGACTGGTGATATTGCTTACTTTGATTCAGATGGG
TATTTGTTCATAGTGGGTCGCTTGAAAGACACAATCAAGTACAAAGGATTTCAGATAGCT
CCAGCTGACTTGGAAGCTGTTCTGATCCGGCACCCTGAAATTATTGATGTTGCTGTGACA
TCTGATGAAGATGAAGAAGCTGGAGAGATACCTGTAGCTTTTGTGGTGAGAAAATCTGGA
AGCACTCTTTCTTGTACGCATGTCATGGAGTATGTGGCCAAGCAGGTGGCGTCGTATAAG
AGAGTGAGGAAGGTAATATTCGTGGAGGCGATACCTAAGTCAGCTGCTGGCAAGGTTCTG
AGGAGGCTTCTCAAGGACTCTCTTGTTGATGCTTCCAGTGGCAGATCCAGGCTATGA

Peptide Sequence

PEP ID

Os10t0578950-00
PEP Infomation

pep chromosome:IRGSP-1.0:10:23083220:23086588:-1 gene:Os10g0578950 transcript:Os10t0578950-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:acyl-CoA synthetase 2, type 2 ACS description:Similar to 4-coumarate--CoA ligase-like 2. (Os10t0578950-00)
Sequence

MQPDAAATAHPSLSFYSAATGLYSSLHPPLPLPSDPSLSLVPHLFSHLPLHHHSLLVDAP
TAATLSCADFRRLVSSLAAGLRRRLHIARGSLVLLLLPNSLTFPVAFLAVLATGAVATTM
NPSSAPAEIAARLRDTAPSLVLASTHNAAKLPPLAAPLVLVPDTFQQQHDDDQFDFFFHA
LLETDPETPVEMGVGVGQDDAAAVLYSSGTSGRSKGVVVTHRNLIAMVELFVRFEASQYT
RPARDNVYLAALPMFHVYGLSLFAVGLLSLGCTVVVMRRFNVDDAVKAIRKYKVTHLPLV
PPIMSALLRANPPLELDSLLQVSSGAAPLNHTLIHHFLHAFPHVDFIQGYGMTESTAVGT
RGFNTCKHKKYASVGLLAPNMHAKIVHLESGSCLPPGSYGELWLHGPAIMKGYLNDDDDA
FTRKDGWLRTGDIAYFDSDGYLFIVGRLKDTIKYKGFQIAPADLEAVLIRHPEIIDVAVT
SDEDEEAGEIPVAFVVRKSGSTLSCTHVMEYVAKQVASYKRVRKVIFVEAIPKSAAGKVL
RRLLKDSLVDASSGRSRL

Transcript Sequence

Transcript ID

Os10t0578950-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:23083220:23086588:-1 gene:Os10g0578950 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:acyl-CoA synthetase 2, type 2 ACS description:Similar to 4-coumarate--CoA ligase-like 2. (Os10t0578950-00)
Sequence

GCAATGCAGCCCGACGCCGCCGCCACCGCCCACCCCAGCTTGAGCTTCTACTCCGCCGCC
ACGGGCCTCTACAGCAGCCTCCACCCTCCCCTACCCCTCCCCTCCGACCCCTCTCTCTCC
CTCGTCCCCCACCTCTTCTCCCATCTCCCCCTCCACCACCATTCCCTCCTCGTCGATGCC
CCCACCGCCGCCACCCTCTCCTGCGCCGACTTCCGCCGCCTCGTCTCCTCCCTCGCCGCC
GGCCTCCGCCGCCGCCTCCACATCGCCAGGGGATCCCTCGTCCTGCTCCTCCTCCCCAAC
TCTCTCACCTTCCCCGTTGCCTTCCTCGCCGTCCTCGCCACCGGCGCCGTCGCCACCACC
ATGAACCCCTCCAGCGCCCCCGCCGAGATCGCCGCGCGCCTGCGGGACACCGCCCCCTCC
CTCGTGCTCGCCTCCACCCACAACGCCGCTAAGCTTCCGCCTCTCGCCGCCCCGCTCGTC
CTCGTGCCCGACACCTTCCAGCAGCAACATGATGATGATCAGTTCGACTTCTTCTTCCAC
GCGCTGCTCGAGACCGACCCCGAAACGCCGGTGGAGATGGGGGTGGGGGTGGGGCAGGAC
GACGCCGCCGCCGTCCTCTACTCGTCGGGGACGAGCGGGCGGAGCAAGGGCGTGGTGGTG
ACGCACCGCAACCTGATCGCAATGGTGGAGCTGTTCGTGCGGTTCGAGGCGTCGCAGTAC
ACGCGGCCTGCTCGTGACAATGTCTACCTGGCGGCATTGCCCATGTTCCACGTCTACGGC
CTCTCCCTCTTCGCCGTGGGCCTCCTCTCGCTCGGCTGCACGGTTGTCGTGATGAGGAGG
TTCAACGTCGACGACGCCGTCAAGGCCATCCGCAAGTACAAGGTGACGCACCTGCCGCTC
GTGCCGCCCATCATGTCGGCACTGCTCAGGGCCAACCCGCCCTTGGAATTGGATTCCTTG
CTGCAGGTCTCCAGCGGCGCTGCTCCCCTCAACCACACCCTCATTCACCACTTCCTTCAC
GCCTTCCCCCACGTTGATTTCATTCAGGGGTATGGCATGACTGAATCTACTGCCGTAGGA
ACTCGCGGCTTCAATACATGCAAGCACAAGAAGTATGCCTCAGTAGGTCTTTTAGCCCCC
AACATGCATGCTAAAATTGTTCATCTGGAAAGTGGTTCTTGTCTGCCTCCAGGCTCTTAT
GGGGAGTTATGGCTCCATGGCCCGGCTATAATGAAAGGTTACTTGAATGATGATGATGAT
GCTTTCACTAGAAAGGATGGCTGGTTGAGGACTGGTGATATTGCTTACTTTGATTCAGAT
GGGTATTTGTTCATAGTGGGTCGCTTGAAAGACACAATCAAGTACAAAGGATTTCAGATA
GCTCCAGCTGACTTGGAAGCTGTTCTGATCCGGCACCCTGAAATTATTGATGTTGCTGTG
ACATCTGATGAAGATGAAGAAGCTGGAGAGATACCTGTAGCTTTTGTGGTGAGAAAATCT
GGAAGCACTCTTTCTTGTACGCATGTCATGGAGTATGTGGCCAAGCAGGTGGCGTCGTAT
AAGAGAGTGAGGAAGGTAATATTCGTGGAGGCGATACCTAAGTCAGCTGCTGGCAAGGTT
CTGAGGAGGCTTCTCAAGGACTCTCTTGTTGATGCTTCCAGTGGCAGATCCAGGCTATGA